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TTGGATTTCCACAGgtgggtgttgctcatgtgatgttacggatcatctctggatatttctttctgagctggggaattttgttctgtttacgttttaacaggaatagttgggatg...
species | Vitis vinifera |
transcript | Vv18s0072g00310.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCCAGGACAGTTGGATTTCCACAG ATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCTEST: gi|110422532|gb|EC988858.1|EC988858
genomic: AGCCAGGACAGTTGGATTTCCACAGgtgggtgttg ... taaaatctagATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCT
EST: AGCCAGGACAGTTGGATTTCCACAG ATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCTEST: gi|110387338|gb|EC951996.1|EC951996
genomic: AGCCAGGACAGTTGGATTTCCACAGgtgggtgttg ... taaaatctagATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCT
EST: AGCCAGGACAGTTGGATTTCCACAG ATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCTEST: gi|349827659|gb|FQ422527.1|FQ422527
genomic: AGCCAGGACAGTTGGATTTCCACAGgtgggtgttg ... taaaatctagATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCT
EST: AGCCAGGACAGTTGGATTTCCACAG ATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCTEST: gi|351014018|gb|FQ434170.1|FQ434170
genomic: AGCCAGGACAGTTGGATTTCCACAGgtgggtgttg ... taaaatctagATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCT
EST: AGCCAGGACAGTTGGATTTCCACAG ATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCTEST: gi|349825575|gb|FQ419492.1|FQ419492
genomic: AGCCAGGACAGTTGGATTTCCACAGgtgggtgttg ... taaaatctagATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCT
EST: AGCCAGGACAGTTGGATTTCCACAG ATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTACCCCCT
genomic: AGCCAGGACAGTTGGATTTCCACAGgtgggtgttg ... taaaatctagATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGATTTCCACAGgtgggtgttgctcatgtgatgttacggatcatctctggatatttctttctgagctggggaattttgttctgtttacgttttaacaggaatagttgggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaata