Sequence
atgc intronic sequence ATGC exonic sequenceTGACGAGGAGCCAAATTATCCCAAGCTGATATCTCTTTTTGAGAACCTAATTGAACCTGTACAAACGAGACCAATTAGAATTGATGGAGCTCTTAAGGTTgttgtgatgtttcatatttttatttctttacttcagaccagatggtaggattccttttctttattgtaatgtcttctgcataactag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G110085_T01 (Zea mays), 5'ss of exon 6
---TGACGAGGAGCCAAATTATCCCAAGCTGATATCTCTTTTTGAGAACCTAATTGAACCTGTACAAACGAGACCAATTAGAATTGATGGAGCTCTTAAGGTTgttgtgatgtttcatatttttatttctttacttcagaccagatggtaggattccttt-tctttat-tgtaatgtcttctgcataactag
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ATTTGACGAAGAGCCAAATTATACCAAGCTGATCTCTCTTTTTGATGGTTTGATTGAAGCACCTGCTTCGAGACAAATCAGAATTGACAGGGCTCTCAAGgtc--tgtactaact---------attccctctcttcatat---atagttagatttctttattcttatatttatttgtttctgtacta-tag
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G017204_T01 (Zea mays), 5'ss of exon 3
---TGACGAGGAGCCAAATTATCCCAAGCTGATATCTCTTTTTGAGAACCTAATTGAACCTGTACAAACGAGACCAATTAGAATTGATGGAGCTCTTAAGGTTgttgtgatgtttcatatttttatt-----tctttacttcagaccagatggta-------ggattccttttctttattgtaatgtcttctgcataactag
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ATTTGACGAAGAGCCAAATTATGCCAAGCTTATCTCTCTTTTTGATGGTTTGATTGAAGCGCCTGCTTCGAGACAAATCGGAACTGATGGGGCTCTCAAGgtctgtactaaaaataatactgcgagtgtccatgctcatttggggcgcactggtagtaggagggatgatttagagttactggtatacacccttattttcc--
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G037923_T02 (Zea mays), 5'ss of exon 11
---TGACGAGGAGCCAAATTATCCCAAGCTGATATCTCTTTTTGAGAACCTAATTGAACCTGTACAAACGAGACCAATTAGAATTGATGGAGCTCTTAAGGTTgttgtgatgtttcatatttttatttctttacttcagaccagatggtaggattccttt-tctttat-tgtaatgtcttctgcataactag
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ATTTGACGAAGAGCCAAATTATGCCAAGCTTATCTCTCTTTTTGATGGTTTGATTGAAGCGCCTGCTTCGAGACAAATCAGAATTGATGGGGCTCTCAAGgtc--tgtactaact---------attccctctcttcatat---atagttagatttctctgtgcttatatttatttgtttctgtacta-tag
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 11
TGACGAGGAGCCAAATTATCCCAAGCTGATATCTCTTTTTGAGAACCTAATTGAAC---CTGTACAAACGAGACCAATTAGAATTGATGGAGCTCTTAAGGTTgttgtgatgtttcatatttttatttctttacttcagaccagatggtaggattcct---tttctttattgtaatgtcttctgcataactag
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TGACGAAGAGCCCAACTATGCAAAGCTTATTTCGATTTTTGATTCTCTTATTGAACAATGTGCACTATCTAGACCAATTAAAATTGATGGTGCTCTTAAGgttgctggcttttttctcgttcttatgcttaattattcgacttgttataaataattctgaaaatgctgattttgg-gtctgttggttta-tagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71861343|gb|DT010398.1|DT010398EST: TTGAACCTGTACAAATGAGACCAATTAGAATTGATGGAGCTCTTAA-G-- GTTGGGCAAAAGCGGGGAAGATTGCTCATAAATTTGGAAGAAGATGAGCAG
genomic: TTGAACCTGTACAAACGAGACCAATTAGAATTGATGGAGCTCTTAAGGTTgttgtgatgt ... gcataactagGTTGGGCAAAAGCGGGGAAGATTGCTCATAAATTTGGAAGAAGATGAGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACGAGGAGCCAAATTATCCCAAGCTGATATCTCTTTTTGAGAACCTAATTGAACCTGTACAAACGAGACCAATTAGAATTGATGGAGCTCTTAAGGTTgttgtgatgtttcatatttttatttctttacttcagaccagatggtaggattccttttctttattgtaatgtcttctgcataactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT