1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGATACCTGGTGAATTTGCGAGGATATTGCAATTCTCCCACCTCCAAATTGTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATGgtgagatccctttctctcttctatttatatgctttgaatgtgttttatgtgtatgataaacatgcatgatgttgaaaaatgttgcataagcatgatgccg...
species | Vitis vinifera |
transcript | Vv02s0087g00170.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAAGCTCTTCATG AGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAGEST: gi|110703464|gb|EE080335.1|EE080335
genomic: GTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATGgtgagatccc ... tgtgacacagAGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAG
EST: GTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATG AGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAGEST: gi|30303383|gb|CB980177.1|CB980177
genomic: GTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATGgtgagatccc ... tgtgacacagAGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAG
EST: GTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATG AGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAGEST: gi|30303577|gb|CB980371.1|CB980371
genomic: GTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATGgtgagatccc ... tgtgacacagAGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAG
EST: GTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATG AGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAGEST: gi|110687636|gb|EE065268.1|EE065268
genomic: GTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATGgtgagatccc ... tgtgacacagAGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAG
EST: GTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATG AGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAG
genomic: GTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATGgtgagatccc ... tgtgacacagAGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATACCTGGTGAATTTGCGAGGATATTGCAATTCTCCCACCTCCAAATTGTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATGgtgagatccctttctctcttctatttatatgctttgaatgtgttttatgtgtatgataaacatgcatgatgttgaaaaatgttgcataagcatgatgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat