1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCACTGCTTTTGGTGGCACTTATGTGCTTTTGGGGCTGCTTTCTTTATAAAAAATGTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAGgtgctgttctcataactattctataacctactgtctgaatgtttattgggctaatatttattatatccttgtccttttgggatcctagaattcaatcatatctattgacaagttatataacttcag
species | Vitis vinifera |
transcript | Vv02s0087g00170.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAAATTTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAG GTGCATTCAATTGT-ATGTTTCATGGAGACCTGCCATACTCTTCAAAAGATEST: gi|110696915|gb|EE073446.1|EE073446
genomic: AAAATGTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAGgtgctgttct ... ataacttcagGTGCAT-CAATTGTTATGTTTCATGGAGACCTGCCATACTCTTCAAAAGAT
EST: AAAATTTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAG GTGCATCAATTGTTATGTTTCATGGAGACCTGCCATACTCTTCAAAAGATAEST: gi|122689621|gb|EC941876.1|EC941876
genomic: AAAATGTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAGgtgctgttct ... ataacttcagGTGCATCAATTGTTATGTTTCATGGAGACCTGCCATACTCTTCAAAAGATA
EST: AAAATTTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAG GTGCATCAATTGTTATGTTTCATGGAGACCTGCCATAATCTTCAAAAGATAEST: gi|110687636|gb|EE065268.1|EE065268
genomic: AAAATGTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAGgtgctgttct ... ataacttcagGTGCATCAATTGTTATGTTTCATGGAGACCTGCCATACTCTTCAAAAGATA
EST: AAAATTTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAG GTGCATCAATTGTTATGTTTCATGGAGACCTGCCATACTCTTCAAAAGATA
genomic: AAAATGTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAGgtgctgttct ... ataacttcagGTGCATCAATTGTTATGTTTCATGGAGACCTGCCATACTCTTCAAAAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACTGCTTTTGGTGGCACTTATGTGCTTTTGGGGCTGCTTTCTTTATAAAAAATGTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAGgtgctgttctcataactattctataacctactgtctgaatgtttattgggctaatatttattatatccttgtccttttgggatcctagaattcaatcatatctattgacaagttatataacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG