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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATGCAACCCAAGATAATGCATGGAAAGCTCATTACCGGGAGGTATTCGATCGTGGCATTCGTGAGGCTTTGTGCTGTCTGGGACGTTTCAAATACTTgtaggcttccctgtgttatggttgacccacagaattttgtttaatatttgcattctgatttttccttttcatttttttacttgattaatatag

Basic information

species Vitis vinifera
transcript Vv05s0124g00140.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0124g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g41200.1 (Oryza sativa), 5'ss of exon 3
TTTATGCAACCCAAGATAATGCATGGAAAGCTCATTACCGGGAGGTATTCGATCGTGGCATTCGTGAGGCTTTGTGCTGTCTGGGACGTTTCAAATACTTgtaggcttccctgtgttatggttgacccacagaattttgtttaatatttgcat-tctgatttttccttttcatttttttacttgattaatatag
| |||||||| || || |  |||||||||||||||||| |||| || ||||||| ||| ||||| || ||||| ||||| || || |||   || ||  ||||||   |    | || |  ||   |     ||| |   |   ||||| | | | |||  |     | | |  |  | |              
TCTATGCAACACATGACATGGCATGGAAAGCTCATTACAGGGAAGTGTTCGATCATGGAATTCGAGAAGCTTTATGCTGCCTAGGGCGTGCAAAGTATCTgtaggtcactacctattctttttatgctgagaaatatcactatttatttacctatatgagctagttgtcttacatactgatgcag---------

upper sequence: Vv05s0124g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G05790.2 (Arabidopsis thaliana), 5'ss of exon 3
TTTATGCAACCCAAGATAATGCATGGAAAGCTCATTACCGGGAGGTATTCGATCGTGGCATTCGTGAGGCTTTGTGCTGTCTGGGACGTTTCAAATACTTgtaggcttccctgtgttatggttgacccacagaattttgtttaat-atttgc----attctgatttttccttttcatttttttactt--gattaatatag------------------
| ||||||||||||||| |||| ||||||||||| |||| ||| ||||| || | ||| |||||||| | |||||||||||| ||||||    ||||  || | | ||   | |  |  | || |       |||  | | || | |||||      |||||    ||  |    | |||  || ||  || |  || |                   
TCTATGCAACCCAAGATGATGCCTGGAAAGCTCACTACCAGGAAGTATTTGACCATGGAATTCGTGAAGTTTTGTGCTGTCTTGGACGTCGTGAATATATgcaagttttgttttcct--gatttaatactgaaatcatttatactcatttgtcctggttctggagatttatagcaactttactagttcagactcttagaatttgattgtctgcttcag

upper sequence: Vv05s0124g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G05790.1 (Arabidopsis thaliana), 5'ss of exon 3
----TTTATGCAACCCAAGATAATGCATGGAAAGCTCATTACCGGGAGGTATTCGATCGTGGCATTCGTGAGGCTTTGTGCTGTCTGGGACGTTTCAA-----ATACTTgtaggcttccctgtgttatggttgacccacagaattttgtttaatatttgcattctgatttttccttttcatttttttacttgattaatatag-
    |   || || |  | | | | || |  |   || | | |      |  |   | | |     |   | |||||  |   || |  |  || |||      |  || || ||  |||    | |||  ||     |  | |       | ||||||      || ||       |  | |  |  ||||       |   
CTGGTGGGTGGAAGC--AAACACTTCAGGTTACCTTCTTGATCACTGTTTGCTTTGTTGCGCTGG-CACAATGCTTTACGGGATCAGATATATTGCAATGGCGgtctttctatgcaacccaagatgatgcctggaaagctcactaccaggaagtatttgaccatggaattcgtgaagttttgtgctgtcttggacgtcgtgaa