1 5' 3' | 2 5' 3' | 3 5' 3' |
AACTTTTCTTCCATCGTTCCTGAATGGCATCGGCAAGGAGAAGTTCATGAACAAGATGGACCTGGAGATCACAGCAGCCAGGAAGAACGCTGGAATTCCTgtaagttattgggatcactttgattgacttagaacttactctcggtttttctag
species | Selaginella moellendorffii |
transcript | EFJ23250 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAAGATGGACCTGGAGATCACAGCAGCCAGGAAGAACGCTGGAATTCCT CATCAAGAGACCGCGATCCAGCAGGGAACATCCGAGTCACTGCACAGAGATEST: gi|169046101|gb|FE455558.1|FE455558
genomic: ACAAGATGGACCTGGAGATCACAGCAGCCAGGAAGAACGCTGGAATTCCTgtaagttatt ... gtttttctagCATCAAGAGACCGCGATCCAGCAGGGAACATCCGAGTCACTGCACAGAGAT
EST: ACAAGATGGACCTGGAGATCACAGCAGCCAGGAAGAACGCTGGAATTCCT CATCAAGAGACCGCGATCCAGCAGGGAACATCCGAGTCACTGCACAGAGAT
genomic: ACAAGATGGACCTGGAGATCACAGCAGCCAGGAAGAACGCTGGAATTCCTgtaagttatt ... gtttttctagCATCAAGAGACCGCGATCCAGCAGGGAACATCCGAGTCACTGCACAGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTTTTCTTCCATCGTTCCTGAATGGCATCGGCAAGGAGAAGTTCATGAACAAGATGGACCTGGAGATCACAGCAGCCAGGAAGAACGCTGGAATTCCTgtaagttattgggatcactttgattgacttagaacttactctcggtttttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA