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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGAGCAATGAAACGGCACTAATTGCCAGATGTAGAAGAGTCTACGCAAATGCTCATGCATATCACATCAATTCCATATCCAACAACAGgtgcattgagcatgaacctttatttgatgatgctttgtttcgaaatttatctaacatgaaagtacccttggttggaaattatgatgaaactctattgtta...

Basic information

species Physcomitrella patens
transcript PP1S100_124V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S100_124V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ08844 (Selaginella moellendorffii), 5'ss of exon 6
CTATGGAGCAATGAAACGGCACTAATTGCCAGATGTAGAAGAGTCTACGCAAATGCTCATGCATATCACATCAATTCCATATCCAACAACAGgtgcattga--gcat----gaacctttatttgatgatgctttgtttcgaaatttatctaacatgaaagtacccttggttggaaattatgatgaaactctattgtta
 | |   |||  || || ||||   ||||||||||||||||||| || |||||||| ||| ||||||| || ||||| || ||||| |||||||    ||   ||||    |  |   | | ||| | || |  | |      |||||  |                                               
GTTTCTTGCACCGAGACAGCACCTTTTGCCAGATGTAGAAGAGTTTATGCAAATGCCCATACATATCATATAAATTCGATTTCCAATAACAGgtcagctgtttgcattgtggggcgcgtgtctgacgctggt--gctctcttttttatgcag----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15728932|gb|BI741051.1|BI741051
EST:     GTCTACGCAAATGCTCATGCATATCACATCAATTCCATATCCAACAACAG                         TGATTGTGAAACATTCATCTCTGCTGACGATTTAAGGATAAATCTGTGGAA
genomic: GTCTACGCAAATGCTCATGCATATCACATCAATTCCATATCCAACAACAGgtgcattgag ... gcatgtgcagTGATTGTGAAACATTCATCTCTGCTGACGATTTAAGGATAAATCTGTGGAA
EST: gi|7648411|gb|AW739394.1|AW739394
EST:     GTCTACGCAAATGCTCATGCATATCACATCAATTCCATATCCAACAACAG                         TGATTGTGAAACATTCATCTCTGCTGACGATTTAAGGATAAATCTGTGGAA
genomic: GTCTACGCAAATGCTCATGCATATCACATCAATTCCATATCCAACAACAGgtgcattgag ... gcatgtgcagTGATTGTGAAACATTCATCTCTGCTGACGATTTAAGGATAAATCTGTGGAA
EST: gi|15730306|gb|BI741781.1|BI741781
EST:     GTCTACGCAAATGCTCATGCATATCACATCAATTCCATATCCAACAACAG                         TGATTGTGAAACATTCATCTCTGCTGACGATTTAAGGATAAATCTGTGGAA
genomic: GTCTACGCAAATGCTCATGCATATCACATCAATTCCATATCCAACAACAGgtgcattgag ... gcatgtgcagTGATTGTGAAACATTCATCTCTGCTGACGATTTAAGGATAAATCTGTGGAA