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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGGATATCAACATGGAATCTGCCCCCGTGGCTACATTCAAAGTCCACGAGTATTTACGACCAAAGgtaacctctgctctcatctgaaacaaccttttaattgataggttacttttactgggtattatttttctaaggtattctgtcatctgagtatgctgcaatg...

Basic information

species Physcomitrella patens
transcript PP1S100_124V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15730306|gb|BI741781.1|BI741781
EST:     AATCTGCCCCCGTGGCTACATTCAAAGTCCACGAGTATTTACGACCAAAG                         CTTTGTGATCTCTACGAGAACGACTCTATTTTCGAC
genomic: AATCTGCCCCCGTGGCTACATTCAAAGTCCACGAGTATTTACGACCAAAGgtaacctctg ... ccttttacagCTTTGTGATCTCTACGAGAACGACTCTATTTTCGAC
EST: gi|162182432|gb|FC358031.1|FC358031
EST:     AATCTGCCCCCGTGGCTACATTCAAAGTCCACGAGTATTTACGACCAAAG                         CTTTGTGATCTCTACGAGAACGACTCTATTTTCGACAAGTTTGAGTGTTGT
genomic: AATCTGCCCCCGTGGCTACATTCAAAGTCCACGAGTATTTACGACCAAAGgtaacctctg ... ccttttacagCTTTGTGATCTCTACGAGAACGACTCTATTTTCGACAAGTTTGAGTGTTGT
EST: gi|67725006|gb|BJ975265.1|BJ975265
EST:     AATCTGCCCCCGTGGCTACATTCAAAGTCCACGAGTATTTACGACCAAAG                         CTTTGTGATCTCTACGAGAACGACTCTATTTTCGACAAGTTTGAGTGTTGT
genomic: AATCTGCCCCCGTGGCTACATTCAAAGTCCACGAGTATTTACGACCAAAGgtaacctctg ... ccttttacagCTTTGTGATCTCTACGAGAACGACTCTATTTTCGACAAGTTTGAGTGTTGT