1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTTGTCGATGAATGGAGATGGTGTGAATCGACCCATACCTGACATTTGTCCCGATTTCGCATTTCCACCTGGAGGGTTCCCGTCACTTCATCTTCCCGCGgtagtcgtactgacctcattctttcaagcttttcaagtgtagtgttctgtctgtcatgtttcgtctgatactgattctgtcggtgtctcggtgcatttcttggtattaagtctcaagtctacatctccaacagttttaaagcaccctgctctaatagaatagtgtcttacgtgtgagctgcag
species | Physcomitrella patens |
transcript | PP1S100_124V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCACTTCATCTTCCCGCG CTATGGAGCAATGAAACGGCACTAATTGCCAGATGTAGAAGAGTCTACGCAEST: gi|7648411|gb|AW739394.1|AW739394
genomic: TCACTTCATCTTCCCGCGgtagtcgtac ... tgagctgcagCTATGGAGCAATGAAACGGCACTAATTGCCAGATGTAGAAGAGTCTACGCA
EST: GTCACTTCATCTTCCCGCG CTATGGAGCAATGAAACGGCACTAATTGCCAGATGTAGAAGAGTCTACGCAEST: gi|15730306|gb|BI741781.1|BI741781
genomic: GTCACTTCATCTTCCCGCGgtagtcgtac ... tgagctgcagCTATGGAGCAATGAAACGGCACTAATTGCCAGATGTAGAAGAGTCTACGCA
EST: GTCACTTCATCTTCCCGCG CTATGGAGCAATGAAACGGCACTAATTGCCAGATGTAGAAGAGTCTACGCA
genomic: GTCACTTCATCTTCCCGCGgtagtcgtac ... tgagctgcagCTATGGAGCAATGAAACGGCACTAATTGCCAGATGTAGAAGAGTCTACGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTCGATGAATGGAGATGGTGTGAATCGACCCATACCTGACATTTGTCCCGATTTCGCATTTCCACCTGGAGGGTTCCCGTCACTTCATCTTCCCGCGgtagtcgtactgacctcattctttcaagcttttcaagtgtagtgttctgtctgtcatgtttcgtctgatactgattctgtcggtgtctcggtgcatttcttggtattaagtctcaagtctacatctccaacagttttaaagcaccctgctctaatagaatagtgtcttacgtgtgagctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG