1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAGATGTTCATCTATGTGGATGCTGCAAATAGTGAAGCATTGCAAGAAATGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAGgtacacaaatcaacttatctctgtattgataaaatctaattcatgtacgaactccagaagatcttcaatgtcaggaggctggtattcttgtttatactaagccttgaaatgtatttttttttgagtag
species | Physcomitrella patens |
transcript | PP1S93_148V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAG GTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGAEST: gi|162156828|gb|FC333640.1|FC333640
genomic: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAGgtacacaaat ... ttttgagtagGTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGA
EST: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAG GTACCAGATTGGTCCCATNCA-GTGACCACTGCAGTEST: gi|100389857|gb|BY971209.1|BY971209
genomic: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAGgtacacaaat ... ttttgagtagGTACCAGATTGGTCCCAT-CAAGTGACCACTGCAGT
EST: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAG GTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGAEST: gi|162254310|gb|FC430445.1|FC430445
genomic: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAGgtacacaaat ... ttttgagtagGTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGA
EST: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAG GTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGAEST: gi|37822501|gb|BJ580567.1|BJ580567
genomic: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAGgtacacaaat ... ttttgagtagGTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGA
EST: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAG GTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGAEST: gi|162254309|gb|FC430444.1|FC430444
genomic: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAGgtacacaaat ... ttttgagtagGTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGA
EST: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAG GTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGAEST: gi|162270470|gb|FC447586.1|FC447586
genomic: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAGgtacacaaat ... ttttgagtagGTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGA
EST: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAG GTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGA
genomic: TGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAGgtacacaaat ... ttttgagtagGTACCAGATTGGTCCCATCAAGTGACCACTGCAGTCCCGGGAGCCTTGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGATGTTCATCTATGTGGATGCTGCAAATAGTGAAGCATTGCAAGAAATGCTTGCTGCAGTGCACAAACGTATGTCTAATGCTGTTGCTAGTCTTGAGgtacacaaatcaacttatctctgtattgataaaatctaattcatgtacgaactccagaagatcttcaatgtcaggaggctggtattcttgtttatactaagccttgaaatgtatttttttttgagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT