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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTACAAAATGCGAAATGCTGGGGCAGTTATTCATAGTCATGGTTTAGAGTCTTGCCTTGCCACTATGATCAATCCCACGGCCAAAGAGTTTCGGgtgtgttttgtatatctcgccttcagaatctccctattcccatcttgattcgcaatttctgcagtgattcatggcttgaagttactgaagtggattggat...

Basic information

species Physcomitrella patens
transcript PP1S1_661V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1_661V6.3 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv12s0028g03470.t01 (Vitis vinifera), 5'ss of exon 4
GCTTACAAAATGCGAAATGCTGGGGCAGTTATTCATAGTCATGGTTTAGAGTCTTGCCTTGCCACTATGATCAATCCCACGGCCAAAGAGTTTCGGgtgtgttttgtatatctcgcct--tcagaatctccctattcccatcttgattcgcaatttctgcagtgattcatggcttgaagttactgaagtggattggat---
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GTTTATGAAATGCGTGATGCTGGGGCTGTTATTCATAGTCATGGAATGGAGTCTTGTATTGTAACGATGATCCTCCCTTTCTCAAAGGAATTTCGAgta-attttttgtacctcaacaagttatatagtgaaaattttcactcttgcttttccttttttc--tcatccatg-ctcgatggtggtgttatcc-ttagttgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100375304|gb|BY948832.1|BY948832
EST:     GAGTCTTGCCTTTGC-ACTATGATCAAATCC-ACGGCCAAAGAGTTTCGG                         ATTACACACATGGAAATGATCAAGGGCATTTGCTGG-CACGGATACTATGA
genomic: GAGTCTTGCCTT-GCCACTATGATCAA-TCCCACGGCCAAAGAGTTTCGGgtgtgttttg ... tgggttacagATTACACACATGGAAATGATCAAGGGCATT-GCTGGGCACGGATACTATGA