1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAGGCACTTGACTTACAAAGAAACGCTATGGAGAGAGCTCTCCAGACGAAGTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgcataacgttggccaaatttcccttcatcactttgctgccactcccattcaccccatttttctacaaagtttgtgggttaagttctgagtttctttctttcttttcttttttttgtgtatgtacag
species | Physcomitrella patens |
transcript | PP1S100_191V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAG AATCTGGGACAGGATCTGGCCGCGAGATTGTGEST: gi|162277582|gb|FC453525.1|FC453525
genomic: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgca ... gtatgtacagAATCTGGGACAGGATCTGGCCGCGAGATTGTG
EST: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAG AATCTGGGACAGGATCTGGCCGCGAGATTGTGEST: gi|162183700|gb|FC359096.1|FC359096
genomic: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgca ... gtatgtacagAATCTGGGACAGGATCTGGCCGCGAGATTGTG
EST: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAG AATCTGGGACAGGATCTGGCCGCGAGATTGTGEST: gi|162245206|gb|FC422135.1|FC422135
genomic: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgca ... gtatgtacagAATCTGGGACAGGATCTGGCCGCGAGATTGTG
EST: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAG AATCTGGGACAGGATCTGGCCGCGAGATTGTGEST: gi|162150325|gb|FC326597.1|FC326597
genomic: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgca ... gtatgtacagAATCTGGGACAGGATCTGGCCGCGAGATTGTG
EST: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAG AATCTGGGACAGGATCTGGCCGCGAGATTGTGEST: gi|162198198|gb|FC372589.1|FC372589
genomic: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgca ... gtatgtacagAATCTGGGACAGGATCTGGCCGCGAGATTGTG
EST: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAG AATCTGGGACAGGATCTGGCCGCGAGATTGTGEST: gi|162166456|gb|FC342438.1|FC342438
genomic: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgca ... gtatgtacagAATCTGGGACAGGATCTGGCCGCGAGATTGTG
EST: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAG AATCTGGGACAGGATCTGGCCGCGAGATTGTGEST: gi|162191940|gb|FC366945.1|FC366945
genomic: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgca ... gtatgtacagAATCTGGGACAGGATCTGGCCGCGAGATTGTG
EST: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAG AATCTGGGACAGGATCTGGCCGCGAGATTGTGEST: gi|162254706|gb|FC430995.1|FC430995
genomic: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgca ... gtatgtacagAATCTGGGACAGGATCTGGCCGCGAGATTGTG
EST: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAG AATCTGGGACAGGATCTGGCCGCGAGATTGTGEST: gi|162171142|gb|FC347756.1|FC347756
genomic: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgca ... gtatgtacagAATCTGGGACAGGATCTGGCCGCGAGATTGTG
EST: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAG AATCTGGGACAGGATCTGGCCGCGAGATTGTG
genomic: GTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgca ... gtatgtacagAATCTGGGACAGGATCTGGCCGCGAGATTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGCACTTGACTTACAAAGAAACGCTATGGAGAGAGCTCTCCAGACGAAGTCTATTAAGACTCTAGTGAGATACCCAGAAGACGCAGAGGAGAAATCAGgtcagctgcataacgttggccaaatttcccttcatcactttgctgccactcccattcaccccatttttctacaaagtttgtgggttaagttctgagtttctttctttcttttcttttttttgtgtatgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA