1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATTTAGAAAGTGACGCTGATGAGCAGCTACTACTCTATATCCCCTTCAACCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagtatatcttgtagtatattcttacattaaaataggttgaaagagtcttataacaattttctggtccactaaggtgttgttggttgtcatagt...
species | Physcomitrella patens |
transcript | PP1S41_70V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|18326829|gb|BJ158829.1|BJ158829
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|208372651|gb|DC944630.1|DC944630
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAGATAGACCAAATATGGGTTTCAGEST: gi|208353940|gb|DC930094.1|DC930094
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAGATAGACCAAATATGGGTTTCAGEST: gi|162241394|gb|FC418559.1|FC418559
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: TCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|162244584|gb|FC423446.1|FC423446
genomic: TCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|162184696|gb|FC361934.1|FC361934
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|67702629|gb|BJ962862.1|BJ962862
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGCAEST: gi|7148048|gb|AW509970.1|AW509970
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGCA
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|18351691|gb|BJ183743.1|BJ183743
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|19780510|gb|BQ039570.1|BQ039570
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|18327559|gb|BJ159562.1|BJ159562
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|67720438|gb|BJ970697.1|BJ970697
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|67709266|gb|BJ965082.1|BJ965082
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|162244583|gb|FC423445.1|FC423445
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|162241395|gb|FC418560.1|FC418560
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAGEST: gi|18354254|gb|BJ186310.1|BJ186310
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
EST: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAG GCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
genomic: CCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagt ... ggcgttttagGCCCAAGAACTTTGAAGCTTTTTGCAAATAGACCAAATATGGGTTTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTTAGAAAGTGACGCTGATGAGCAGCTACTACTCTATATCCCCTTCAACCAAGTGGTCAAGCTTCATTCCTTGATCATCAGAGGACCTCCAGAGGAAGgtatacaagtatatcttgtagtatattcttacattaaaataggttgaaagagtcttataacaattttctggtccactaaggtgttgttggttgtcatagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA