1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCATGGGGGAGCTTATAAGAACATGAAGACACTTCTGAGACATAAACTCACCCATCATGATTCTTCCAAGTgtatgttttaatctcttgcacgaactttaggaatgattgcaaagtttactgtgctgagctcaccagtttataatgatttcgttactcgcagttaattatt...
species | Physcomitrella patens |
transcript | PP1S40_20V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATGAAGACACTTCTGAGACATAAACTCACCCATCATGATTCTTCCAAGT ATGACGGGTTCCGATTGACGAATTTAGGGTATGATTATCTAGCCATAAGGAEST: gi|18365022|gb|BJ197096.1|BJ197096
genomic: CATGAAGACACTTCTGAGACATAAACTCACCCATCATGATTCTTCCAAGTgtatgtttta ... ttatgtgcagATGACGGGTTCCGATTGACGAATTTAGGGTATGATTATCTAGCCATAAGGA
EST: CATGAAGACACTTCTGAGACATAAACTCACCCATCATGATTCTTCCAAGT ATGACGGGTTCCGATTGACGAATTTAGGGTATGATTATCTAGCCATAAGGAEST: gi|67576846|gb|BJ949670.1|BJ949670
genomic: CATGAAGACACTTCTGAGACATAAACTCACCCATCATGATTCTTCCAAGTgtatgtttta ... ttatgtgcagATGACGGGTTCCGATTGACGAATTTAGGGTATGATTATCTAGCCATAAGGA
EST: CATGAAGACACTTCTGAGACATAAACTCACCCATCATGATTCTTCCAAGT ATGACGGGTTCCGATTGACGAATTTAGGGTATGATTATCTAGCCATAAGGA
genomic: CATGAAGACACTTCTGAGACATAAACTCACCCATCATGATTCTTCCAAGTgtatgtttta ... ttatgtgcagATGACGGGTTCCGATTGACGAATTTAGGGTATGATTATCTAGCCATAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGGGGGAGCTTATAAGAACATGAAGACACTTCTGAGACATAAACTCACCCATCATGATTCTTCCAAGTgtatgttttaatctcttgcacgaactttaggaatgattgcaaagtttactgtgctgagctcaccagtttataatgatttcgttactcgcagttaattatt
- - - - - - - - - - - TGAAGA