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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCCAGGGCAGAGCAGAATTACAACCCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgactttgtccattcatgccacattgcagtgcagttatttgtagactgcaacctgagaatagtcgatccttttgaagctgacttattagtaggtgcattatttatctgaacgtttcgatttgagtaattttgctttgttgcag

Basic information

species Physcomitrella patens
transcript PP1S28_168V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100446747|gb|CJ971046.1|CJ971046
EST:     CCCTCGGANTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCAGAACNCCCATTGCTGTCACCGTTCCCAACACANACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|208358357|gb|DC934550.1|DC934550
EST:     CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|208390477|gb|DC933734.1|DC933734
EST:     CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|67508161|gb|BJ941032.1|BJ941032
EST:     CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|162159689|gb|FC336075.1|FC336075
EST:     CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|100385742|gb|BY987807.1|BY987807
EST:     TTGC-AAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
genomic: TTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|162189601|gb|FC365823.1|FC365823
EST:     CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|67572551|gb|BJ945375.1|BJ945375
EST:     CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|100439543|gb|BY961986.1|BY961986
EST:     CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGGACGCCCATTGCTGTCACCGTTCCCCACACAGACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|67508549|gb|BJ941412.1|BJ941412
EST:     CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|162152501|gb|FC328779.1|FC328779
EST:     CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
EST: gi|162188362|gb|FC364232.1|FC364232
EST:     CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACG                         GACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC
genomic: CCCTCGGAGTGAAACAGACACTTGCAAAATTCTTTCAGGCGTTGGAAACGgtaggtgact ... tttgttgcagGACTTACACTCGGAACGCCCATTGCTGTCACCGTTCCCAACACAGACCAGC