1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTGCAAGGCTCACTTCTGGCTTATCCCATGGCTGCTGGAGTGCCGATGCTAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAGgttagcactttaacttttctatatggtgtctatcctctattcgaattaaaacaactaggaataagttatcgctgcaagtagaattgcaatctgcatataa...
species | Physcomitrella patens |
transcript | PP1S19_254V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAG GACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATGEST: gi|100421658|gb|BY976252.1|BY976252
genomic: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAGgttagcactt ... gtgccctcagGACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATG
EST: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAG GACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATGEST: gi|18325651|gb|BJ157648.1|BJ157648
genomic: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAGgttagcactt ... gtgccctcagGACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATG
EST: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAG GACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATGEST: gi|100440610|gb|BY962297.1|BY962297
genomic: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAGgttagcactt ... gtgccctcagGACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATG
EST: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAG GACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATGEST: gi|100405311|gb|BY955462.1|BY955462
genomic: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAGgttagcactt ... gtgccctcagGACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATG
EST: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAG GACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATGEST: gi|100410559|gb|BY992161.1|BY992161
genomic: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAGgttagcactt ... gtgccctcagGACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATG
EST: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAG GACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATGEST: gi|162279579|gb|FC455344.1|FC455344
genomic: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAGgttagcactt ... gtgccctcagGACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATG
EST: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAG GACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATGEST: gi|100440335|gb|BY962181.1|BY962181
genomic: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAGgttagcactt ... gtgccctcagGACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATG
EST: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAG GACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATG
genomic: TAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAGgttagcactt ... gtgccctcagGACAAAAATGGGGGAGAAGTTAAGGCGCAACTACCTGACTTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCAAGGCTCACTTCTGGCTTATCCCATGGCTGCTGGAGTGCCGATGCTAGTGGTCGATGCGACATCTCCAGAAGTCTCTCAGATGGCTTCAGGAGAGgttagcactttaacttttctatatggtgtctatcctctattcgaattaaaacaactaggaataagttatcgctgcaagtagaattgcaatctgcatataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaacaa