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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGCACATCTAGATGTGATTGGTTCAAAATCTGTTTCAAAACCTTTTGTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAGgtgagttcctgtggctttttgaggttcttcgtgtacctttcaatgactcggttatctaacgatgaacgattatctagttttagaaactgcatagtcgtgg...

Basic information

species Physcomitrella patens
transcript PP1S100_44V6.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162240585|gb|FC419362.1|FC419362
EST:     GTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAG                         CTGTGAACCGAATTTGATCAACTACGAAGTGCTTGTTGAAAGTATGGACTG
genomic: GTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAGgtgagttcct ... ttaaatgcagCTGTGAACCGAATTTGATCAACTACGAAGTGCTTGTTGAAAGTATGGACTG
EST: gi|162186736|gb|FC362772.1|FC362772
EST:     GTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAG                         CTGTGAACCGAATTTGATCAACTACGAAGTGCTTGTTGAAAGTATGGACTG
genomic: GTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAGgtgagttcct ... ttaaatgcagCTGTGAACCGAATTTGATCAACTACGAAGTGCTTGTTGAAAGTATGGACTG
EST: gi|162186737|gb|FC362773.1|FC362773
EST:     GTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAG                         CTGTGAACCGAATTTGATCAACTACGAAGTGCTTGTTGAAAGTATGGACTG
genomic: GTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAGgtgagttcct ... ttaaatgcagCTGTGAACCGAATTTGATCAACTACGAAGTGCTTGTTGAAAGTATGGACTG
EST: gi|162271686|gb|FC448611.1|FC448611
EST:     GTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAG                         CTGTGAACCGAATTTGATCAACTACGAAGTGCTTGTTGAAAGTATGGACTG
genomic: GTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAGgtgagttcct ... ttaaatgcagCTGTGAACCGAATTTGATCAACTACGAAGTGCTTGTTGAAAGTATGGACTG
EST: gi|162240586|gb|FC419363.1|FC419363
EST:     GTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAG                         CTGTGAACCGAATT-GATCA-CTACGAAGTGCTTGTTG
genomic: GTAATAGATGCAACCAAATATGGAAATGTTGCTCGATTTATTAATCATAGgtgagttcct ... ttaaatgcagCTGTGAACCGAATTTGATCAACTACGAAGTGCTTGTTG