Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162277667|gb|FC453298.1|FC453298EST: AGCCACTGCATACTCCCTTTTCAAACATAGCAAAGATTTTCTAGAGC--- --------A-AGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: AGCCACTGCATACT-CCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
EST:
gi|162244546|gb|FC425397.1|FC425397EST: AGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAG TGTTTTTGACAGGTTTTATTNTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: AGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
EST:
gi|67694690|gb|BJ954923.1|BJ954923EST: CCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGC--- --------A-AGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: CCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
EST:
gi|162244547|gb|FC425398.1|FC425398EST: AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAG TGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
EST:
gi|162277666|gb|FC453297.1|FC453297EST: AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGC--- --------A-AGGTTTTATTNTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
EST:
gi|67699892|gb|BJ960125.1|BJ960125EST: AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGC--- --------A-AGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTGAGTTGGAGAATCTGAGTCCACTTCACAGCCCCCCTATTCATCGTCGAAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcaggaactctttctttgtttttgattctgtttccagatctgtaagagttgaagtgaacaatcgacgtgccagaagcaaggttcacctcatccttggcgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG