1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGTGGAGGTGGAGGGGGATATCGAGGGCGACTTGGATGGGGAGCCAGACGACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaattttcctgaattgtactctgcatgtgtcaatgtgatcagggacgacggacttgcgaatggtgacattgtgttgtcgtatgattatgttcatgct...
species | Physcomitrella patens |
transcript | PP1S422_18V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAG GAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCCEST: gi|208368699|gb|DC940036.1|DC940036
genomic: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaatttt ... cgtttgctagGAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCC
EST: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAG GAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCCEST: gi|208366662|gb|DC931319.1|DC931319
genomic: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaatttt ... cgtttgctagGAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCC
EST: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAG GAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCCEST: gi|100435890|gb|BY979275.1|BY979275
genomic: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaatttt ... cgtttgctagGAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCC
EST: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAG GAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCCEST: gi|208389601|gb|DC945825.1|DC945825
genomic: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaatttt ... cgtttgctagGAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCC
EST: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAG GAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCCEST: gi|100400310|gb|BY954413.1|BY954413
genomic: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaatttt ... cgtttgctagGAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCC
EST: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAG GAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCCEST: gi|208376819|gb|DC906802.1|DC906802
genomic: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaatttt ... cgtttgctagGAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCC
EST: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAG GAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCCEST: gi|162266936|gb|FC441789.1|FC441789
genomic: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaatttt ... cgtttgctagGAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCC
EST: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAG GAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCCEST: gi|100421243|gb|BY976133.1|BY976133
genomic: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaatttt ... cgtttgctagGAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCC
EST: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAG GAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGAAGGAGGAAGCTGCC
genomic: ACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaatttt ... cgtttgctagGAACTAGAGGAGATGAAGAAGCGTTTGAAAGAGATGGAGGAGGAAGCTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGGAGGTGGAGGGGGATATCGAGGGCGACTTGGATGGGGAGCCAGACGACCTCCTTCTCAAGGGGGACGATACTGCCACCGACGAAGCTGCTTCCAAGgtacaattttcctgaattgtactctgcatgtgtcaatgtgatcagggacgacggacttgcgaatggtgacattgtgttgtcgtatgattatgttcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT