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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGCATTTATACTGGCCTTATTTGCACTGATCTCCACTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtataccttcgccagcttcatttcaaggtagaagggtatgccatttaatttctagaggttgctactcccgtttctgtgccccgccgcgggttttcg...

Basic information

species Physcomitrella patens
transcript PP1S100_117V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18342277|gb|BJ174312.1|BJ174312
EST:     CTTTCATACTTCGGCTCCGCAGTCTGTCTG                         CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
genomic: CTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtatac ... tggttggcagCTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
EST: gi|18368349|gb|BJ200434.1|BJ200434
EST:     CTTATTTGCACTGATCTCCACTTTCATACTTCGGCTCCGCAGTCTGTCTG                         CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
genomic: CTTATTTGCACTGATCTCCACTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtatac ... tggttggcagCTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
EST: gi|100425066|gb|BY976955.1|BY976955
EST:     ACTTTCATACTTCGGCTCCGCAGTCTGTCTG                         CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
genomic: ACTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtatac ... tggttggcagCTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
EST: gi|100441292|gb|BY962581.1|BY962581
EST:     ACTTTCATACTTCGGCTCCGCAGTCTGTCTG                         CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
genomic: ACTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtatac ... tggttggcagCTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
EST: gi|208357262|gb|DC910659.1|DC910659
EST:     CTTATTTGCACTGATCTCCACTTTCATACTTCGGCTCCGCAGTCTGTCTG                         CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
genomic: CTTATTTGCACTGATCTCCACTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtatac ... tggttggcagCTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
EST: gi|100392297|gb|BY953293.1|BY953293
EST:     ACTTTCATACTTCGGCTCCGCAGTCTGTCTG                         CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
genomic: ACTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtatac ... tggttggcagCTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
EST: gi|18357729|gb|BJ189788.1|BJ189788
EST:     ACTTTCATACTTCGGCTCCGCAGTCTGTCTG                         CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
genomic: ACTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtatac ... tggttggcagCTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
EST: gi|100360601|gb|BY984200.1|BY984200
EST:     CTTTCATACTTCGGCTCCGCAGTCTGTCTG                         CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
genomic: CTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtatac ... tggttggcagCTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
EST: gi|100432786|gb|BY978739.1|BY978739
EST:     ACTTTCATACTTCGGCTCCGCAGTCTGTCTG                         CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
genomic: ACTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtatac ... tggttggcagCTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
EST: gi|100397347|gb|BY972453.1|BY972453
EST:     CTTTCATACTTCGGCTCCGCAGTCTGTCTG                         CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT
genomic: CTTTCATACTTCGGCTCCGCAGTCTGTCTGgtacgtatac ... tggttggcagCTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGT