1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAGCAAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAGgtacataatgtggcaatatcagaaatcaaaagtgcagacctacttactttcatatcaattattgtactaacttctccattgattttgcatataacag
species | Oryza sativa |
transcript | LOC_Os06g49430.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGAGGAAGCATGCTTCTTTACCGAG GGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGAEST: gi|88406114|gb|CI593894.1|CI593894
genomic: AGAGGAAGCATGCTTCTTTACCGAGgtacataatg ... catataacagGGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGA
EST: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAG GGAGAGAGTAGGTGTATCAAAGEST: gi|29672762|gb|CB669037.1|CB669037
genomic: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAGgtacataatg ... catataacagGGAGAGAGTAGGTGTATCAAAG
EST: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAG GGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGAEST: gi|89195898|gb|CI007317.1|CI007317
genomic: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAGgtacataatg ... catataacagGGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGA
EST: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAG GGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGAEST: gi|218481672|gb|FG962985.1|FG962985
genomic: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAGgtacataatg ... catataacagGGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGA
EST: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAG GGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGAEST: gi|58682915|gb|CK071602.1|CK071602
genomic: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAGgtacataatg ... catataacagGGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGA
EST: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAG GGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGAEST: gi|218490968|gb|FG950249.1|FG950249
genomic: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAGgtacataatg ... catataacagGGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGA
EST: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAG GGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAEST: gi|86829561|gb|CI286751.1|CI286751
genomic: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAGgtacataatg ... catataacagGGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACA
EST: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAG GGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGAEST: gi|29646573|gb|CB651580.1|CB651580
genomic: AAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAGgtacataatg ... catataacagGGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGA
EST: TGCAGAGGAAGCATGCTTCTTTACCGAG GGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGA
genomic: TGCAGAGGAAGCATGCTTCTTTACCGAGgtacataatg ... catataacagGGAGAGAGTAGGTGTATCAAAGGATGGTTATAACCAACAAAACACCAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAGCAAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCGAGgtacataatgtggcaatatcagaaatcaaaagtgcagacctacttactttcatatcaattattgtactaacttctccattgattttgcatataacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA