1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTgtaagttctcatcccataatggtaatggctagttgggaaagttgtgacaaaacatggatatagctagacccagtgtggtattttcacatctagcttaaaa...
species | Oryza sativa |
transcript | LOC_Os12g44310.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCT ATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGEST: gi|33381584|gb|CF196927.1|CF196927
genomic: TATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTgtaagttctc ... tcgttttcagATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGG
EST: TATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCT ATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGEST: gi|58590901|gb|CF989209.1|CF989209
genomic: TATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTgtaagttctc ... tcgttttcagATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGG
EST: TATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCT ATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGEST: gi|29644980|gb|CB649987.1|CB649987
genomic: TATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTgtaagttctc ... tcgttttcagATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGG
EST: TATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCT ATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGEST: gi|58687308|gb|CK075995.1|CK075995
genomic: TATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTgtaagttctc ... tcgttttcagATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGG
EST: ATCTATCACCATGGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCT ATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGEST: gi|33795168|gb|CF323457.1|CF323457
genomic: ATCTATCACCAT-GGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTgtaagttctc ... tcgttttcagATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGG
EST: TATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCT ATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGG
genomic: TATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTgtaagttctc ... tcgttttcagATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTgtaagttctcatcccataatggtaatggctagttgggaaagttgtgacaaaacatggatatagctagacccagtgtggtattttcacatctagcttaaaa
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