1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTCTTGCTTTTCATTGCAGATGTTCCTCGTATCTTGCAAGATGGTTTAAGTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctctattgaagtttcattctttattgttcatcttacattctcacatcatgcctcagtgcctcatgacattgccctacatgtaggatttccttc...
species | Oryza sativa |
transcript | LOC_Os01g46590.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCA GTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTTEST: gi|29616522|gb|CB621534.1|CB621534
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
EST: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCA GTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTTEST: gi|88224185|gb|CI224034.1|CI224034
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
EST: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCA GTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTTEST: gi|88843413|gb|CI372313.1|CI372313
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
EST: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCA GTGTACTTTCTTGACGGGGAAGCGATTTTGGAAACTATGTTAAGCTACTTTEST: gi|58690016|gb|CK078703.1|CK078703
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
EST: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCA GTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTTEST: gi|25804323|gb|CA760284.1|CA760284
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
EST: GTTGTTTATTTCGTGTGTTTGCAGCATTGGCTGTAGTCAATTGCTTACCA GTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTTGCTTTTCATTGCAGATGTTCCTCGTATCTTGCAAGATGGTTTAAGTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctctattgaagtttcattctttattgttcatcttacattctcacatcatgcctcagtgcctcatgacattgccctacatgtaggatttccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG