1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCCCTTCTCTCAGAAGTTCCGCAATACTGACCCCTTGGCTCTTCGTCTGCTAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaagagaaagcatagcatcctttccaaacctcaaaagtagtttttttttaaaaaaaaaaactttcagaaaacacacattttttatatgttatattctcttccaattttcag
species | Oryza sativa |
transcript | LOC_Os06g49430.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAA GCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCCEST: gi|88406114|gb|CI593894.1|CI593894
genomic: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaa ... caattttcagGCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCC
EST: TAAAGATCGGTCTTCAGCTGAAGAA GCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCCEST: gi|33381883|gb|CF197226.1|CF197226
genomic: TAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaa ... caattttcagGCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCC
EST: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGCCTTCAGCTGAAGAA GCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCCEST: gi|58693904|gb|CK082591.1|CK082591
genomic: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaa ... caattttcagGCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCC
EST: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGCCTTCAGCTGAAGAA GCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCCEST: gi|58663177|gb|CK051863.1|CK051863
genomic: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaa ... caattttcagGCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCC
EST: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGCCTTCAGCTGAAGAA GCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCCEST: gi|218481672|gb|FG962985.1|FG962985
genomic: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaa ... caattttcagGCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCC
EST: CATTTGATCCTAAAGATCGGCCTTCAGCTGAAGAA GCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCCEST: gi|218490968|gb|FG950249.1|FG950249
genomic: CATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaa ... caattttcagGCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCC
EST: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGCCTTCAGCTGAAGAA GCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCCEST: gi|58589575|gb|CF987883.1|CF987883
genomic: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaa ... caattttcagGCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCC
EST: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGCCTTCAGCTGAAGAA GCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCCEST: gi|58661035|gb|CK049715.1|CK049715
genomic: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaa ... caattttcagGCTTTGGCTGATCCGTACTTCGCAAGTCTTGCTAATGTGGAACGTGAGCCC
EST: TAGAGCGTTTACTGGCATTTGATCCTCAAGATCGGACTTCAGCTGAAGAA GCTTTGGCTGATCCGTACTTCG
genomic: TAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaa ... caattttcagGCTTTGGCTGATCCGTACTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCTTCTCTCAGAAGTTCCGCAATACTGACCCCTTGGCTCTTCGTCTGCTAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaagagaaagcatagcatcctttccaaacctcaaaagtagtttttttttaaaaaaaaaaactttcagaaaacacacattttttatatgttatattctcttccaattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA