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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCACTGGGAGACCACTATTTCCTGGGAAGAATGTTGTGCACCAATTAGATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttactttataccgattctcatatatccttgaacctcctattcagtaacattcaagaagatccaattctctaataagatgaaacaatcaccttactgttttctgcgtctctgcag

Basic information

species Oryza sativa
transcript LOC_Os06g49430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49430.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G135904_T01 (Zea mays), 5'ss of exon 5
TCTCACTGGGAGACCACTATTTCCTGGGAAGAATGTTGTGCACCAATTAGATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatg----tttactttataccgattctcatatatccttgaacctcctattcagtaacattcaagaagatccaattctctaataagatgaaacaatcaccttactgttttctgcgtctctgcag
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |||||       | | ||| | | |  | |||    | |   |||||| || |   || |||| ||| || |    || ||||| ||||             |                       
TCTCACTGGAAGGCCACTATTTCCTGGGAAGAATGTTGTACACCAATTAGATATTATAACAGATCTTCTTGGGACTCCATCATCTGAGACCTTATCCCGGgtactacatctcaattttttctg--tgtcactgttgcccaaacctcgtaat--atatcattaaagtagctaatgttttctaacaagactctgggcctgtttgga--------------------

upper sequence: LOC_Os06g49430.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G306028_T02 (Zea mays), 5'ss of exon 5
TCTCACTGGGAGACCACTATTTCCTGGGAAGAATGTTGTGCACCAATTAGATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtat---gtttactttataccgattctcatatatccttgaacctcctattcagtaacattcaagaagat--ccaattctctaataagatgaaacaatcaccttactgttttctgcgtctctgcag
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||  |||||     | |   ||||  |        | | | | | |||||||||||   || |||| ||| || |      |||||||| ||||  ||         |                       
TCTCACTGGAAGGCCACTATTTCCTGGGAAGAATGTTGTACACCAATTAGATATTATAACAGATCTTCTTGGAACTCCATCATCTGAGACCTTATCTCGGgtactgcatctcaattatttctgagtcatttttttcctaaacctcctatt--atatcattaaagtagctaatgtgttctctaacaagactaagggtctgttt-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33795692|gb|CF323716.1|CF323716
EST:     ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG                         ATTCGAAATGAG
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAG
EST: gi|58652759|gb|CK041439.1|CK041439
EST:     ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG                         ATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCG
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCG
EST: gi|33381883|gb|CF197226.1|CF197226
EST:     TTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG                         ATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
genomic: TTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
EST: gi|58663889|gb|CK052575.1|CK052575
EST:     ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG                         ATTCGAAATGAGACGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
EST: gi|58693904|gb|CK082591.1|CK082591
EST:     ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG                         ATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
EST: gi|58663177|gb|CK051863.1|CK051863
EST:     ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG                         ATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
EST: gi|58668308|gb|CK056994.1|CK056994
EST:     ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG                         ATTCGAAATGAGAAGGCCA
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCA
EST: gi|58589575|gb|CF987883.1|CF987883
EST:     TATTATAACAGATCTTCTTGGAACTCCATCGATCAGAAACCTTATCCAGG                         ATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
genomic: TATTATAACAGATCTTCTTGGAACTCCATC-ATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
EST: gi|58661035|gb|CK049715.1|CK049715
EST:     ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG                         ATTCGAAATGAGAAGGGCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT