1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGCTATCAAGTTTGTTCTCTCTGGTGCAAACATAATGTGTCCTGGATTGACATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagacttgcctctaaacctctattcatcaactgtagatgcattaagaatgaatctcatctgtaggtggtcatagttaacaatataacatgtttata...
species | Oryza sativa |
transcript | LOC_Os01g21180.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATCTCCAGGTGGTTCCTTGGATTTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATT-GATATACAAAGEST: gi|29289887|gb|CB483501.1|CB483501
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCAAGCATTGGC-ATTGGATATACAAAGEST: gi|88835943|gb|CI371048.1|CI371048
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: TGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGCCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|29687412|gb|CB683687.1|CB683687
genomic: TGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|33682858|gb|CF311097.1|CF311097
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTAATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAEST: gi|88473032|gb|CI410303.1|CI410303
genomic: CAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCT-ATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAA
EST: GAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|88531796|gb|CI460307.1|CI460307
genomic: GAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: ATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|88852472|gb|CI374240.1|CI374240
genomic: ATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: TTGAGGAGGAAACACCAGTG GCTATAAT-GCTGAA-GCAAACAGCATGCATT-GCAATTGGATATACAAAGEST: gi|86522655|gb|CI162861.1|CI162861
genomic: TTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: ATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACNCAGTG GCTATAATGGCTGAANGGCAAACAGCATGCATTGGCAATTGGATATACAAEST: gi|88514235|gb|CI441741.1|CI441741
genomic: ATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACAC-CAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAA-GGCAAACAGCATGCATTGGCAATTGGATATACAA
EST: AGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|58030638|gb|CX728181.1|CX728181
genomic: AGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|88508109|gb|CI435615.1|CI435615
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|88549468|gb|CI479359.1|CI479359
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: TGAANTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|88484301|gb|CI421572.1|CI421572
genomic: TGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: GGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
genomic: GGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTATCAAGTTTGTTCTCTCTGGTGCAAACATAATGTGTCCTGGATTGACATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagacttgcctctaaacctctattcatcaactgtagatgcattaagaatgaatctcatctgtaggtggtcatagttaacaatataacatgtttata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA