1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgttctgctgataccaaaacctgtgctttgtttggtgttaatgttgaagcattcttcacactggtctgatgatctctgatcgacctgagaaatgcaaattatcctatttgtattctagccacttctattgctgtcctggacagttaattaatgacaccattgatttgtgaacattgtccccttgcag
species | Oryza sativa |
transcript | LOC_Os01g16900.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAGGTCCTCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTCATEST: gi|55410982|gb|CV723358.1|CV723358
genomic: GGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|218503212|gb|FG950056.1|FG950056
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|27554418|gb|CA998318.1|CA998318
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|41883639|gb|BX928526.1|BX928526
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|29673427|gb|CB669702.1|CB669702
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|29616639|gb|CB621651.1|CB621651
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: AATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|29639681|gb|CB644690.1|CB644690
genomic: AATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAAGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATEST: gi|29639682|gb|CB644691.1|CB644691
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|58593071|gb|CF991379.1|CF991379
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|55410961|gb|CV723337.1|CV723337
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|29619530|gb|CB624542.1|CB624542
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|29619531|gb|CB624543.1|CB624543
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|29664535|gb|CB660810.1|CB660810
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|58669476|gb|CK058162.1|CK058162
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCEST: gi|27554444|gb|CA998344.1|CA998344
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATC
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|29616640|gb|CB621652.1|CB621652
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|4714232|gb|AU058199.1|AU058199
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|29671573|gb|CB667848.1|CB667848
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|86900281|gb|CI296324.1|CI296324
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATEST: gi|29664534|gb|CB660809.1|CB660809
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTAT
EST: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTA
genomic: ACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgtt ... ccccttgcagCTTGTGAAGAATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttgttctgctgataccaaaacctgtgctttgtttggtgttaatgttgaagcattcttcacactggtctgatgatctctgatcgacctgagaaatgcaaattatcctatttgtattctagccacttctattgctgtcctggacagttaattaatgacaccattgatttgtgaacattgtccccttgcag
- - - - - - - - - - - - - - - - - - - - - GAGGAG