1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGCTGCTGCACCAATGGCGCCTTCGGTGCATCGTCACCGGGAGGCAACGCCGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagcactgcacaccttggtgtctccatccatcttcaatggatctatctttgcaatcatgcattcagtcttgacagctacatctttccatactatt...
species | Oryza sativa |
transcript | LOC_Os11g29840.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACT ACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCATEST: gi|29660472|gb|CB656747.1|CB656747
genomic: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagca ... tctgatgcagACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
EST: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACT ACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCATEST: gi|86503509|gb|CI146142.1|CI146142
genomic: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagca ... tctgatgcagACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
EST: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACT ACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCATEST: gi|86502350|gb|CI144983.1|CI144983
genomic: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagca ... tctgatgcagACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
EST: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACT ACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCATEST: gi|88223842|gb|CI223691.1|CI223691
genomic: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagca ... tctgatgcagACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
EST: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACT ACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCATEST: gi|88989272|gb|CI043771.1|CI043771
genomic: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagca ... tctgatgcagACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
EST: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACT ACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCATEST: gi|29641691|gb|CB646698.1|CB646698
genomic: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagca ... tctgatgcagACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
EST: CGAGATGAACGGCAACAAGAGCGGCCCCTGGATCAAGACTGATGCCGACT ACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCATEST: gi|88198427|gb|CI198277.1|CI198277
genomic: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagca ... tctgatgcagACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
EST: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACT ACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCATEST: gi|89177380|gb|CI250829.1|CI250829
genomic: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagca ... tctgatgcagACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
EST: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACT ACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCATEST: gi|87037435|gb|CI192057.1|CI192057
genomic: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagca ... tctgatgcagACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
EST: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACT ACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
genomic: CGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagca ... tctgatgcagACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGCTGCACCAATGGCGCCTTCGGTGCATCGTCACCGGGAGGCAACGCCGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGACTGATGCCGACTgtgagtagcactgcacaccttggtgtctccatccatcttcaatggatctatctttgcaatcatgcattcagtcttgacagctacatctttccatactatt
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccatcc