1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTgtaagtaacttgtagaatgcatatatctttactataggtacctgtcaattgtggaaattgcgtaaagtttctgatagtatttacaatatgcatatgcatg...
species | Oryza sativa |
transcript | LOC_Os01g07376.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATT GTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCAEST: gi|88827894|gb|CI778459.1|CI778459
genomic: AAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTgtaagtaact ... ccatttgtagGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCA
EST: AAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATT GTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCAEST: gi|88357530|gb|CI623584.1|CI623584
genomic: AAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTgtaagtaact ... ccatttgtagGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCA
EST: AAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATT GTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCAEST: gi|58593123|gb|CF991431.1|CF991431
genomic: AAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTgtaagtaact ... ccatttgtagGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCA
EST: AAGAGAATTGGGACCACAAAATTGCAGAGGCAGACAAGGATGGGAAAATT GTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCAEST: gi|218497249|gb|FG946477.1|FG946477
genomic: AAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTgtaagtaact ... ccatttgtagGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCA
EST: AAGAGAATTGGGACCACAAAATTGCAGAGGCAGACAAGGATGGGAAAATT GTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCA
genomic: AAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTgtaagtaact ... ccatttgtagGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTgtaagtaacttgtagaatgcatatatctttactataggtacctgtcaattgtggaaattgcgtaaagtttctgatagtatttacaatatgcatatgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG