1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
GATCAGTATATAAGGGATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGCCACCAGATGCAgtgagtttggatattctccctgtttcagtttactgttaactgacttttatctctatcaattggaggatttgatttttcttacatgaacaccaagttatatgcactatcatcaccaccaattggtgttgacacgagttgaaatggatataaaacatttaatctcattgtcatttgtctggtttggcag
species | Oryza sativa |
transcript | LOC_Os06g43760.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: TCCACTAATT-C-AAGATGGCGGCGCCACCAGATGCA GTAATGATCTGTGAGGAGTCTCACAATGTACAAGGAGATGTCGTTTGTCATEST: gi|2311767|gb|C27922.1|C27922
genomic: TCCACTAATTCCAAAGATGGCGGCGCCACCAGATGCAgtgagtttgg ... ggtttggcagGTAATGATCTGTGAGGAGTCTCACAATGTACAA-GACATGTCGTTTGTCAT
EST: ATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGC-ACCAGATGCA GTAATGATCTGTGAGGGGGTCTCACAATGTACAAGACATGTCGTTTGTCATEST: gi|427179|gb|D23261.1|D23261
genomic: ATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGCCACCAGATGCAgtgagtttgg ... ggtttggcagGTAATGATCTGTGAGGAG-TCTCACAATGTACAAGACATGTCGTTTGTCAT
EST: ATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCG-CACCAGATGCA GTAATGATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTCATTEST: gi|33690901|gb|CF319140.1|CF319140
genomic: ATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGCCACCAGATGCAgtgagtttgg ... ggtttggcagGTAATGATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTCATT
EST: ATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGCCACCAGATTCA GTAATGATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTCATTEST: gi|300216188|gb|HO087973.1|HO087973
genomic: ATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGCCACCAGATGCAgtgagtttgg ... ggtttggcagGTAATGATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTCATT
EST: ATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGCCACCAGATGCA GTAATGATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTCATTEST: gi|29627105|gb|CB632116.1|CB632116
genomic: ATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGCCACCAGATGCAgtgagtttgg ... ggtttggcagGTAATGATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTCATT
EST: ATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGCCACCAGATGCA GTAATGATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTCATT
genomic: ATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGCCACCAGATGCAgtgagtttgg ... ggtttggcagGTAATGATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCAGTATATAAGGGATGCTCTTGGCAATCCACTAATTCCAAAGATGGCGGCGCCACCAGATGCAgtgagtttggatattctccctgtttcagtttactgttaactgacttttatctctatcaattggaggatttgatttttcttacatgaacaccaagttatatgcactatcatcaccaccaattggtgttgacacgagttgaaatggatataaaacatttaatctcattgtcatttgtctggtttggcag
- - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG