1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGGGATCTAACAGATATCCCTGCAATCCTTGTCTTTGTTGCTCGCAAGGTTCATAAGAAGTGGCTTAATCCAGCACAATGTCTTCCTGCTATTCTTGAGgtgcggaaacttaatctccattgttgtttgaatttggtttgggacggtctaagtttttctgctaaatctttcacttagttggatcattaacagggtccag...
species | Oryza sativa |
transcript | LOC_Os04g52479.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCATAAGAAGTGGCTTAATCCAGCACAATGTCTTCCTGCTATTCTTGAG GGTCCAGGAGGTGTTTGGTGTGATGTTGATGTTGTTGAATTTTCGTACTACEST: gi|58605986|gb|CK034019.1|CK034019
genomic: TTCATAAGAAGTGGCTTAATCCAGCACAATGTCTTCCTGCTATTCTTGAGgtgcggaaac ... tcattaacagGGTCCAGGAGGTGTTTGGTGTGATGTTGATGTTGTTGAATTTTCGTACTAC
EST: TTCATAAGAAGTGGCTTAATCCAGCACAATGTCTTCCTGCTATTCTTGAG GGTCCAGGAGGTGTTTGGTGTGATGTTGATGTTGTTGAATTTTCGTACTACEST: gi|58670093|gb|CK058779.1|CK058779
genomic: TTCATAAGAAGTGGCTTAATCCAGCACAATGTCTTCCTGCTATTCTTGAGgtgcggaaac ... tcattaacagGGTCCAGGAGGTGTTTGGTGTGATGTTGATGTTGTTGAATTTTCGTACTAC
EST: TTCATAAGAAGTGGCTTAATCCAGCACAATGTCTTCCTGCTATTCTTGAG GGTCCAGGAGG
genomic: TTCATAAGAAGTGGCTTAATCCAGCACAATGTCTTCCTGCTATTCTTGAGgtgcggaaac ... tcattaacagGGTCCAGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGGATCTAACAGATATCCCTGCAATCCTTGTCTTTGTTGCTCGCAAGGTTCATAAGAAGTGGCTTAATCCAGCACAATGTCTTCCTGCTATTCTTGAGgtgcggaaacttaatctccattgttgtttgaatttggtttgggacggtctaagtttttctgctaaatctttcacttagttggatcattaacagggtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT