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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATAATATATATTGCAACCATTGGTGACATAGTGGATGGAACTGATACGACTCATGATTTCAACTACTTCTCCTTAGTCTATGAAAGGCCCAAAGATgtaagccatttacaattttacatatcatgttctgaagtcagatcaaatctatacattttcacttttaatgtttttccttctttgtactggaaacttgaaa...

Basic information

species Oryza sativa
transcript LOC_Os01g40990.3
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g40990.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G327311_T02 (Zea mays), 5'ss of exon 7
TTTCATAATATATATTGCAACCATTGGTGACATAGTGGATGGAACTGATACGACTCATGATTTCAACTACTTCTCCTTAGTCTATGAAAGGCCCAAAGATgtaagccatttacaat--tttacatatcatgttctgaagtcagatcaaatctatacattttcacttttaatgtttttc--cttctttgtactggaaacttgaaa-
 ||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||| |||| |||||||||||   | | |  |   ||  ||   ||||| |    |    |   ||  |||| ||   |  || ||||    ||  | | ||   |     || |||| | 
CTTCATAATATATACTGCAACCATTGGTGACATAGTTGATGGAACTGACACAACTCATGATTTCAACTATTTCTCGTTAGTCTATGAATGGCCAAAAGATgtaagatgtattctgtaccttctattcgatgtttt----ttttcttgtattcatacgttga-atcttgaatgagaatcaacatattcacaaatttaaattgatat

upper sequence: LOC_Os01g40990.3 (Oryza sativa), 5'ss of exon 15
lower sequence: AT2G25730.2 (Arabidopsis thaliana), 5'ss of exon 14
TTTCATAATATATATTGCAACCATTGGTGACATAGTGGATGGAACTGATACGACTCATGATTTCAACTACTTCTCCTTAGTCTATGAAAGGCCCAAAGATgtaagccatttacaattttacatatcatgttctgaagtcagatcaaatctatacattttcacttttaat-gtttttccttctttgtactggaaacttgaaa
 || ||  | |||| |||  | |||||||| ||||| ||||||||||| || || |||||||||||||  |||||  | || |||||| |||| ||||| |||||   ||     ||| |  |     |        ||| || || ||| | | || ||| |  |  | ||  |    || |  || |      ||    
GTTTATCCTCTATACTGCTGCTATTGGTGATATAGTAGATGGAACTGACACAACCCATGATTTCAACTTTTTCTCTCTTGTTTATGAATGGCCTAAAGACgtaagtgtttctttttttgatgttctcaggatatttttcatataaactctcttccttgtcattcatgcttgtggtattatcctcttaatctgcttttatt-

upper sequence: LOC_Os01g40990.3 (Oryza sativa), 5'ss of exon 15
lower sequence: Vv04s0008g04520.t01 (Vitis vinifera), 5'ss of exon 15
TTTCATAATATATATTGCAACCATTGGTGACATAGTGGATGGAACTGATACGACTCATGATTTCAACTACTTCTCCTTAGTCTATGAAAGGCCCAAAGATgtaag----ccatttacaat---tttacatatcatgttctgaagtca-gatcaaatctat-acattttcacttttaatgtttttccttctttgtactggaaacttgaaa
 || ||| |  |||||||  | |||||||||||||| ||||| || ||||| |||||||||||||| |  |||||  | || |||||  |||| |||||||||||    |  ||| |  |   || |  |||| |||   ||  | | |||||  |  || ||||||     |||  || ||   |  |  |||  | |          
ATTTATACTCCATATTGCTGCAATTGGTGACATAGTTGATGGGACAGATACAACTCATGATTTCAATTTTTTCTCGCTTGTATATGAGTGGCCTAAAGATgtaagatttcttttttccctgggttaaactatcctgtctggatttgaagatcatgttcatgacatttgttactttgttgattgcacaacaatgttatagg---------