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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTGGAATGGACGGAGGCGGGGCGCACCGCACGCCGGAGGACGTGTTCCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAGgtatggaggggggaagaggggtctctcggtttgagctctcacgcggatgctttttctttttcttttttgaaaggaaaaattgggtgggttttgaaggggtactgattgatcggttgggttgctgatgagtggtgaatgagtggctgattttggtttggttggatttttttttgtttcttttgcag

Basic information

species Oryza sativa
transcript LOC_Os11g14010.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g14010.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G008259_T01 (Zea mays), 5'ss of exon 1
-GTGGGTGGAATGGACGGAGGCGGGGCGCACCGCACGCCGGAGGACGTGTTCCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAGgtatggaggggggaagaggggtctctcggtttgagctctcacgcggatgctttttctttttcttttttgaaaggaaaaattgggtgggttttgaaggggtactgattgatcggttgggttgctgatgagtggtgaatgagtggctgattttggtttggttggatttttttttgtttcttttgcag
    || |  |||||||| |||||  |||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||| |||| |                 | |  | |       || || |      |||  |    ||  |   | ||    |   |  ||| |    |  | ||    | | ||| ||||   | || | | | ||||   ||| | | |   ||   |   |                           
CACTGG-GAGATGGACGGCGGCGGCACGCACCGCACGCCGGAAGACGTGTTCCGGGATTTCCGCGCGCGGCGGGCTGGTATGATCAAAGCGCTCACCACCGgtacg-----------------cgcctgctc------cttaccca-----tttccccccctccctcgcggaatttgaggatttgtgaggcccgcggaggcttcgctcgattggtttcctggcggctaattggt--ttgatttggttgcttccttgcag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32948276|gb|BP184848.1|BP184848
EST:     CCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAG                         ATGTGGAGAAGTTCTACCAGCAGTGCGACCCAG
genomic: CCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAGgtatggaggg ... tcttttgcagATGTGGAGAAGTTCTACCAGCAGTGCGACCCAG
EST: gi|58678314|gb|CK067001.1|CK067001
EST:     CCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAG                         ATGTGGAGAAGTTCTACCAGCAGTGCGACCCAG
genomic: CCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAGgtatggaggg ... tcttttgcagATGTGGAGAAGTTCTACCAGCAGTGCGACCCAG
EST: gi|58675845|gb|CK064532.1|CK064532
EST:     CCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAG                         ATGTGGAGAAGTTCTACCAGCAGTGCGACCCAG
genomic: CCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAGgtatggaggg ... tcttttgcagATGTGGAGAAGTTCTACCAGCAGTGCGACCCAG
EST: gi|426996|gb|D23072.1|D23072
EST:     CCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAG                         ATGTGGAGAAGTTCTACCAGCAGTGCGACCCAG
genomic: CCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAGgtatggaggg ... tcttttgcagATGTGGAGAAGTTCTACCAGCAGTGCGACCCAG