1 5' 3' | 2 5' 3' | 3 5' 3' |
AATCCGCACGCCGCCGCCTCCCTCTCTGCTTCGCACTCCATTTTCCCTCTCCCCGCTCGCCGCCGCCGCCGCCGCCAGCCAAGCTCGCCGCTCGCCATGGgtaagcctccccctcctctccctctctccggttcatctcgattagttttagctctcaatcccttccggatctgaccgtttcttggacaaatgtcag
species | Oryza sativa |
transcript | LOC_Os04g30730.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCCGCCGCCGCCAGCCAAGCTCGCCGCTCGCCATGG CCCGGATCAAGGTGCACGAGCTCCGGGGGAAGACCAAGGCGNAGCTGCAGGEST: gi|163925689|gb|EG714525.1|EG714525
genomic: GCCGCCGCCGCCGCCAGCCAAGCTCGCCGCTCGCCATGGgtaagcctcc ... caaatgtcagCCCGGATCAAGGTGCACGAGCTCCGGGGGAAGAACAAGGCGGAGCTGCAGG
EST: CGCCAGCCAAGCTCGCCGCTCGCCATGG CCCGGATCAAGGTGCACGAGCTCCGGGGGAAGAACAAGGCGGAGCTGCAGGEST: gi|88238895|gb|CI236746.1|CI236746
genomic: CGCCAGCCAAGCTCGCCGCTCGCCATGGgtaagcctcc ... caaatgtcagCCCGGATCAAGGTGCACGAGCTCCGGGGGAAGAACAAGGCGGAGCTGCAGG
EST: CCGCTCGCCATGG CCCGGATCAAGGTGCACGAGCTCCGGGGGAAGAACAAGGCGGAGCTGCAGG
genomic: CCGCTCGCCATGGgtaagcctcc ... caaatgtcagCCCGGATCAAGGTGCACGAGCTCCGGGGGAAGAACAAGGCGGAGCTGCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCCGCACGCCGCCGCCTCCCTCTCTGCTTCGCACTCCATTTTCCCTCTCCCCGCTCGCCGCCGCCGCCGCCGCCAGCCAAGCTCGCCGCTCGCCATGGgtaagcctccccctcctctccctctctccggttcatctcgattagttttagctctcaatcccttccggatctgaccgtttcttggacaaatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT