1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGgtgagtcgccgtcgtcggctagctagctctgaggaggagcagcacgcgcccgtgtcgatttggggatcagggcgagctctgcctcgccgccgtggggtgc...
species | Oryza sativa |
transcript | LOC_Os04g27850.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAG GCTCTTTACTTCAGTTGGGGTTTTTCCGCCGGATAGATGATCACTCAA
genomic: GCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGgtgagtcgcc ... acaatttcagGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAGATGATCACTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGgtgagtcgccgtcgtcggctagctagctctgaggaggagcagcacgcgcccgtgtcgatttggggatcagggcgagctctgcctcgccgccgtggggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtcggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggcgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccgccg