1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATTTGTCGTGAGCTTGTGAGGCTAGTAGAACAAGGTGACAAGAAGAGCCTATCGAAGTATAAGCAAGATTTCTGGGGAGGACTGGGAAGTATAGAAAAGgtatgaacatcaacatgttcttgttcttggtaatatttacacagaagttttttcccatgttgtggtgcattgttgatgtagaattcatgtctactagtaa...
species | Oryza sativa |
transcript | LOC_Os01g67090.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCGAAGTATAAGCAAGATTTCTGGGGAGGACCTGGGAAGTATAGAAAAG GCACAGGGAGGAAATGGTCTTGTTGAGTTTTGAGCAGAAAACATCAATTATEST: gi|568942|gb|D39791.1|D39791
genomic: ATCGAAGTATAAGCAAGATTTCTGGGGAGGAC-TGGGAAGTATAGAAAAGgtatgaacat ... gcatatgcagGCACAGGGAGGAAATGGTCTTGTTGAGTTTTGAGCAGAAAACATCAATTAT
EST: TATCGAAGTATAAGCAAGATTTCTGGGGAGGACTGGGAAGTATAGAAAAG GCACAGGGAGGAAATGGTCTTGTTGAGTTTTGAGCAGAAAACATCAATTATEST: gi|569113|gb|D39962.1|D39962
genomic: TATCGAAGTATAAGCAAGATTTCTGGGGAGGACTGGGAAGTATAGAAAAGgtatgaacat ... gcatatgcagGCACAGGGAGGAAATGGTCTTGTTGAGTTTTGAGCAGAAAACATCAATTAT
EST: TATCGAAGTATAAGCAAGATTTCTGGGGAGGACTGGGAAGTATAGAAAAG GCACAGGGAGGAAATGGTCTTGTTGAGTTTTGAGCAGAAAACATCAATTAT
genomic: TATCGAAGTATAAGCAAGATTTCTGGGGAGGACTGGGAAGTATAGAAAAGgtatgaacat ... gcatatgcagGCACAGGGAGGAAATGGTCTTGTTGAGTTTTGAGCAGAAAACATCAATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTGTCGTGAGCTTGTGAGGCTAGTAGAACAAGGTGACAAGAAGAGCCTATCGAAGTATAAGCAAGATTTCTGGGGAGGACTGGGAAGTATAGAAAAGgtatgaacatcaacatgttcttgttcttggtaatatttacacagaagttttttcccatgttgtggtgcattgttgatgtagaattcatgtctactagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA