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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCCTCCCTCCCCTCCCTCCTTCCCCCACCCGCTTCCCTTGCCGTCGCCGCCGCCGCCGACCGCCGCGGGAGGGGAGGTCCCCGGCGCCATCTCCCAGgtgcgccccctctctcgctctaaatctcccccctccccctccctgatccgatcgacgccccggatcgctctcctgcttcctcctccgggggctccgattt...

Basic information

species Oryza sativa
transcript LOC_Os01g39310.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88372513|gb|CI610836.1|CI610836
EST:     GGGAGGGGAGGTCCCCGGCGCCATCTCCCAG                         AAATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTTTTCA
genomic: GGGAGGGGAGGTCCCCGGCGCCATCTCCCAGgtgcgccccc ... tgtcttgcagAAATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTTTTCA
EST: gi|29675672|gb|CB671947.1|CB671947
EST:     GGGAGGGGAGGTCCCCGGCGCCATCTCCCAG                         AAATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTTTTCA
genomic: GGGAGGGGAGGTCCCCGGCGCCATCTCCCAGgtgcgccccc ... tgtcttgcagAAATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTTTTCA
EST: gi|66925214|gb|CX112062.1|CX112062
EST:     CGCCG-CGCCGACCGCCGCGGGAGGGGAGGT-CCCGGCGCCATCTCCCAG                         AAATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTNTTCA
genomic: CGCCGCCGCCGACCGCCGCGGGAGGGGAGGTCCCCGGCGCCATCTCCCAGgtgcgccccc ... tgtcttgcagAAATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTTTTCA
EST: gi|29671821|gb|CB668096.1|CB668096
EST:     GGGAGGGGAGGTCCCCGGCGCCATCTCCCAG                         AAATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTTTTCA
genomic: GGGAGGGGAGGTCCCCGGCGCCATCTCCCAGgtgcgccccc ... tgtcttgcagAAATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTTTTCA
EST: gi|29664221|gb|CB660496.1|CB660496
EST:     CGCCGCCGCCGACCGCCTCTGGAGGGGAGGTCCCCGGCGCCATCTCCCAG                         AAATGGACGCCTGTTTTTCAACACAGCTTATTGATGGACATGGCGTTTTCA
genomic: CGCCGCCGCCGACCGCCGCGGGAGGGGAGGTCCCCGGCGCCATCTCCCAGgtgcgccccc ... tgtcttgcagAAATGGACGCCTGTTTTTCAACACAGCTTATTGATGGAGATGGCGTTTTCA