Sequence
atgc intronic sequence ATGC exonic sequenceAACAAAGCAAGCTGCGCATAGATTGAAGATTATATTTGGATTAGCTGGCTCAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAGgtatgttgctaatattgatatgtgtatttctgtattttggctcttttgttggctttgtagttatgttactatctcattttttgggatactaaaatgatgt...
Basic information
species | Glycine max |
transcript | GLYMA18G11950.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os12g29660.1 (Oryza sativa), 5'ss of exon 9
AACAAAGCAAGCTGCGCATAGATTGAAGATTATATTTGGATTAGCTGGCTCAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAGgtatgttgctaatattgatatgtgtatttctgtattttggctcttttgttggctttgtagttatgttactatctcattttttgggatactaaaatgatgt--
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CACAAAGCATTCTGCTCACAGATTGAAAATAATATTTGGTCTCTCCGGGATGAAAGCTGCTGAACTTCATGGCAACCTTACGCAGGCCCAGCGGCTTGAGgtgattttatgttacagttcttcctttaccttcctttta-ccgtctccttagctc-acatccatgtttcctaattgtaatttttagtaccatggcagctttt
upper sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G16630.1 (Arabidopsis thaliana), 5'ss of exon 9
AACAAAGCAAGCTGCGCATAGATTGAAGATTATATTTGGATTAGCTGGCTCAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAGgtatgttgctaatattgatatgtgtatttctgtattttggctcttttgttggct--ttgtagttatgttactatctcattttttgggatactaaaatgatgt
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AACAAAACAAGCTGCACATAGACTGAAAATTTTATTCGGATTAGCTGGCCTCAAAGCAGCTGAGCTTCATGGAAACCTAACTCAAGCACAACGTCTTGATgtaagaaacttgggcacatcagctt-tatttgtacatgaatatttctgttctctgtttgcaagtacttaatggtatcattttgcag----------------
upper sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 9
AACAAAGCAAGCTGCGCATAGATTGAAGATTATATTTGGATTAGCTGGCTCAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAGgtatgttgctaatattgatatgtgtatttctgtattttggctctt-----ttgttggctttgtagttatgttactatctcattttttgggatactaaaatgatgt----------------------------------------
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AACCAAACAAGCTGCACATAGGTTGAAGATTTTGTTTGGATTGGCTGGCTTTAAGGCTGCTGAGCTTCATGGAAATCTTACACAAGTCCAGCGTCTTGATgtgagtttcttg-actctttcatttggcttggatgcttggttcttaacaatacctattttccaaaatttggtgctataatttggtactaaaagtgaatttaatgctaattgaagtttgctttgccttcctttcttattgagctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208150063|gb|GD944301.1|GD944301EST: CAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAG GCTTTGGAACAGTTCAGG
genomic: CAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAGgtatgttgct ... atctatttagGCTTTGGAACAGTTCAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAAAGCAAGCTGCGCATAGATTGAAGATTATATTTGGATTAGCTGGCTCAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAGgtatgttgctaatattgatatgtgtatttctgtattttggctcttttgttggctttgtagttatgttactatctcattttttgggatactaaaatgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA