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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTCTGTTATGGTTTCCGGAACCTGCAGAACATTGTACGAAAACTTAAAACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAGgtaccgtgtttttcctttttcataaattttatttatttgttggtttttgttagttatcaatattttttcacaaggcccataaaattggtaggtattgaactgaaaaagaatgttccctcaatgcag

Basic information

species Glycine max
transcript GLYMA17G01120.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01120.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0508g00020.t01 (Vitis vinifera), 5'ss of exon 9
GCTCTCTGTTATGGTTTCCGGAACCTGCAGAACATTGTACGAAAACTTAAAACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAGgtaccgtgtttttcctttttcataaattttatttatttg--ttggtttttg-----ttagttatcaatattttttcacaaggcccataaaa--ttggtaggtattgaactgaaaaagaatgttccctcaatgcag
||  | || ||||| ||||| ||||||||||| |||||  ||||| | || | ||| ||||||||||| || || || ||  |||||||||||||||||||||   |  |||| ||||  || |  || |||||  |||  ||||  ||||       |   ||  |   || |    ||  |   |  ||  |||  | |  |  ||||| | |      ||   |||||    
GCATTATGCTATGGCTTCCGCAACCTGCAGAATATTGTGAGAAAAATCAAGATTGGAAAATGTGATTACCACTTTCTGGAGGTCATGGCATGCCCTTCAGgtattttcatttttctttccca-actttctattttgttgagttgggatttgaattcccaaacattcaggcttctgtttaaatcaacttgaactttgaaatgggtaaaactggatata---ttttgatcaatag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331982|gb|FK024512.1|FK024512
EST:     TTTCCTAGAAATCATGGCATGCCCTTCAG                         GTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
genomic: TTTCCTAGAAATCATGGCATGCCCTTCAGgtaccgtgtt ... ctcaatgcagGTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
EST: gi|9902332|gb|BE611300.1|BE611300
EST:     AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAG                         GTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
genomic: AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAGgtaccgtgtt ... ctcaatgcagGTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
EST: gi|31310021|gb|CD395224.1|CD395224
EST:     AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAG                         GTTGCTTAAATGGGGGAGGTCAAATTAAACCAAGTTCAGGGCAATCTCCTA
genomic: AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAGgtaccgtgtt ... ctcaatgcagGTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
EST: gi|6482176|gb|AW201447.1|AW201447
EST:     AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAG                         GTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
genomic: AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAGgtaccgtgtt ... ctcaatgcagGTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
EST: gi|14992014|gb|BI317687.1|BI317687
EST:     AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAG                         GTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
genomic: AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAGgtaccgtgtt ... ctcaatgcagGTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
EST: gi|254341393|gb|GR855121.1|GR855121
EST:     AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAG                         GTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
genomic: AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAGgtaccgtgtt ... ctcaatgcagGTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
EST: gi|10709530|gb|BF009254.1|BF009254
EST:     AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAG                         GTTGCTTANATGGAG-AGGTCAAATTAAACCAAGTTCAGGGC
genomic: AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAGgtaccgtgtt ... ctcaatgcagGTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGC
EST: gi|19269650|gb|BM885906.1|BM885906
EST:     AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAG                         GTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA
genomic: AACTGGGAAATGTGATTATCATTTCCTAGAAATCATGGCATGCCCTTCAGgtaccgtgtt ... ctcaatgcagGTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTA