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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacgactaaaatatgttactcattgctatagtttgattataaaaatgtgtctaaaacatagtataatccatgtctcatgttatttcagtaaacattaaagttctccactattatgtgaggttatccacaccataaccatcattacgttgttttccag

Basic information

species Glycine max
transcript GLYMA13G26280.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325140|gb|FK017526.1|FK017526
EST:     GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG                         GGGCA-TGCAATTTGATGCAGAATATGCTAG-TGGCTGGAAGAGCAGAATC
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: gi|192329072|gb|FK021425.1|FK021425
EST:     GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG                         GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: gi|19346060|gb|BM890940.1|BM890940
EST:     GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG                         GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: gi|13252262|gb|BG363165.1|BG363165
EST:     GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG                         GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: gi|193368153|gb|FK329969.1|FK329969
EST:     GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG                         GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: gi|193328847|gb|FK293551.1|FK293551
EST:     GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG                         GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: gi|9565078|gb|BE474587.1|BE474587
EST:     GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG                         GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: gi|193422285|gb|FK391494.1|FK391494
EST:     GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG                         GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTTGGAAGAGCAGAAT
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCT-GGAAGAGCAGAAT
EST: gi|192312701|gb|FK004389.1|FK004389
EST:     -ATTT-CATATCAAGCTCGGGTGATCA-GCACATACATTGAGTG-AA-TG                         GG-CA-TGCA-TTTGATGCAG
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacgactaaaatatgttactcattgctatagtttgattataaaaatgtgtctaaaacatagtataatccatgtctcatgttatttcagtaaacattaaagttctccactattatgtgaggttatccacaccataaccatcattacgttgttttccag

- - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - AGTGGA