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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTTGGGCTGGAGTTTAGTGAGCTTCGGGAGTACACCCATGGATTCTTCAGCAATGTTGCTGAGATTTTGGATGACAGTTTTGCACATgtatgcatagattcactattcattattcctatatcttgcttactcttacagttgaaattttgtattggtaaacag

Basic information

species Glycine max
transcript GLYMA08G19960.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19960.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G27640.1 (Arabidopsis thaliana), 5'ss of exon 9
GGATTTGGGCTGGAGTTTAGTGAGCTTCGGGAGTACACCCATGGATTCTTCAGCAATGTTGCTGAGATTTTGGATGACAGTTTTGCACATgtatgcatagattcactattcattattcctata----tct--tgcttactcttacagttgaaattttgtattggtaaacag
|||||||   ||||||| |||||| | || || || || ||||||||||||||||| || || || || |||||||||| |||||| || || |||||| |||   |    ||       |||    ||   || |||   ||| |||  | ||   || ||      |||
GGATTTGAATTGGAGTTCAGTGAGTTGCGAGAATATACTCATGGATTCTTCAGCAACGTAGCAGAAATATTGGATGACACTTTTGCCCAGgtgtgcatacatttctttcaaatagacttcataatactccagtgattaggtttaaagtaaacatagcgt-ttttcccgcag

upper sequence: GLYMA08G19960.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 5'ss of exon 9
GGATTTGGGCTGGAGTTTAGTGAGCTTCGGGAGTACACCCATGGATTCTTCAGCAATGTTGCTGAGATTTTGGATGACAGTTTTGCACATgtat-gcatagattcact--------attcat-tattcctatatcttgcttactcttacagttgaaattttgtattggtaaacag
|| ||||   ||||||| ||||||||||| |||||||| |||||||||||||||||| | || |||||| ||||||| |||||| |||| ||||  || || |  | |         || || |  |  | | | ||    |   |||    | |||  || | |||| ||||||
GGTTTTGCATTGGAGTTCAGTGAGCTTCGTGAGTACACACATGGATTCTTCAGCAATTTGGCAGAGATTATGGATGATAGTTTTACACAGgtattacacagttctatttgaattaagtttatgtgataatttcttttagccatgtttatgtgtaaaaagttattttggcaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13477942|gb|BG507613.1|BG507613
EST:     ATGGTTTCTTCAGCAATGTTGCTGTTATTTGGGATGACAGTTTTGCACAT                         TATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGAT
genomic: ATGGATTCTTCAGCAATGTTGCTGAGATTTTGGATGACAGTTTTGCACATgtatgcatag ... tggtaaacagTATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGAT