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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtatgatgctttagtattcctttttgttttttgatttgtcactttcttagcatttggaatttacttttcacttttcaaaatacag

Basic information

species Glycine max
transcript GLYMA17G01820.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01820.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0116g00020.t01 (Vitis vinifera), 5'ss of exon 9
GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtat------------gatgctttagtattcctttttgttttttgatttgtcactttcttagcatttggaatttacttttcacttttcaaaatacag
| | || | ||||||||||||||||||||||| ||| |||| |||   ||||| || ||| ||||||| || ||||||||||            | |||||    | |    | |  |       ||||  |||||||   | ||   | ||| | || |||    |||| ||||
GTTGTTTTATCTGCATTTGATTCAGATGCATCACTTGATGTCTTGAGCCATCCGATCTTGAACTTGATCTACTACATGgtattcttctaacctcgttgcttacaaactttcctctagtcggcatcttgtacctttcttttaacttttgaattattatttactaa--aaaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337606|gb|BI498262.1|BI498262
EST:     CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtatgatgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|22928978|gb|BU546117.1|BU546117
EST:     CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtatgatgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|26058229|gb|CA801143.1|CA801143
EST:     CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtatgatgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|20814667|gb|BQ299145.1|BQ299145
EST:     CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtatgatgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|58014541|gb|CX701283.1|CX701283
EST:     CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtatgatgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|22929487|gb|BU546626.1|BU546626
EST:     CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtatgatgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|7925940|gb|AW831966.1|AW831966
EST:     CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtatgatgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|17518941|gb|BM187983.1|BM187983
EST:     CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtatgatgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|14999917|gb|BI320731.1|BI320731
EST:     CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtatgatgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG