1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGATGTATGGTCCTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAATgtactttttttagttgttttttttttcatctcagttgattaatttataaactgtgtacactttctgactcttaacattcttatacag
species | Glycine max |
transcript | GLYMA08G20090.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAATTTCAGGAAAACCATCAAT CGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAAEST: gi|9986553|gb|BE660661.1|BE660661
genomic: AAAATTTCAGGAAAACCATCAATgtactttttt ... tcttatacagCGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
EST: ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAAT CGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAAEST: gi|254336045|gb|GR841370.1|GR841370
genomic: ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAATgtactttttt ... tcttatacagCGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
EST: ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAAT CGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAAEST: gi|254326913|gb|GR836522.1|GR836522
genomic: ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAATgtactttttt ... tcttatacagCGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
EST: ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAAT CGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
genomic: ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAATgtactttttt ... tcttatacagCGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGTATGGTCCTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAATgtactttttttagttgttttttttttcatctcagttgattaatttataaactgtgtacactttctgactcttaacattcttatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT