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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGGgtatgcacatactacctgcacatgatattcactagaagttagctcataattgttcaacaatttcataatcatagttttgttttgtagtggtcttttcagtcatttgctaagtttcagacatgtcctataatgaagtgtagtgctaaatttcactctatattgtgatttactgcag

Basic information

species Glycine max
transcript GLYMA08G20090.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322663|gb|GR838077.1|GR838077
EST:     AAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGG                         AGAATCACCATTAAGGAAATCAAGTCCCACCCATGGTTTGTAAAGAACTTG
genomic: AAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGGgtatgcacat ... tttactgcagAGAATCACCATTAAGGAAATCAAGTCCCACCCATGGTTTGTAAAGAACTTG
EST: gi|9986553|gb|BE660661.1|BE660661
EST:     AAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGG                         AGAATCACCATTAAGGAAATCAAGTCCCACCCATGGTTTGTAAAGAACTTG
genomic: AAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGGgtatgcacat ... tttactgcagAGAATCACCATTAAGGAAATCAAGTCCCACCCATGGTTTGTAAAGAACTTG
EST: gi|254336045|gb|GR841370.1|GR841370
EST:     AAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGG                         AGAATCACCATTAAAGGAAATCAAGTCCCACCCATGGTTTGTAAAGAACTT
genomic: AAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGGgtatgcacat ... tttactgcagAGAATCACCATTAA-GGAAATCAAGTCCCACCCATGGTTTGTAAAGAACTT
EST: gi|9903322|gb|BE612290.1|BE612290
EST:     AAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCCAATCCAGCTAGG                         AGAATCACCATTAAGGAAATCAAGTCCCATCCATGGTTTGTAAAGAACCTG
genomic: AAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGGgtatgcacat ... tttactgcagAGAATCACCATTAAGGAAATCAAGTCCCACCCATGGTTTGTAAAGAACTTG
EST: gi|254326913|gb|GR836522.1|GR836522
EST:     AAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGG                         AGAATCACCATTAAGGAAATCAAGTCCCACCCATGGTTTGTAAAGAACTTG
genomic: AAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGGgtatgcacat ... tttactgcagAGAATCACCATTAAGGAAATCAAGTCCCACCCATGGTTTGTAAAGAACTTG