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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttccgttaattttagatgaacttgtaaaattattgtgatataggttggtttgttgttcaatatgtcattattgagacccaataatttgtcatgttttatatatattttttgacttattttttaaatccctctttctattcattcag

Basic information

species Glycine max
transcript GLYMA19G31050.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G31050.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g20310.2 (Oryza sativa), 5'ss of exon 5
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttccgttaattttagatgaacttgtaaaattattgtgatataggttggtttgttgttcaatatgtcattattgagacccaataatttgtcatgttttatatatattttttgacttattttttaaatccctctttctattcattcag
   ||| | |||||||||||||||||||||||||| || ||||| || ||||| |||||||||    || |  |   || |||   | |  ||         || |   | |  | |  || |   |     | ||   |   |      ||       ||| ||                                                   
GTGTTACGCCGGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAGgta----ctataaccacaactttttgtcatattacctgtccttttttggacaa-tggaattatgacttctggtctccgcaccaactaaggatgcacatccatatt---------------------------------------------------

upper sequence: GLYMA19G31050.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 5
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttccgttaattttagatgaacttgtaaaattattgtgatataggttggtttgttgttcaatatgtcattattgagacccaataatttgt-catgttttatatatattttttgacttattttttaaatccctctttctattcattcag
||| |  | ||||||||||||||||||||||| || || ||||| || |||||||||||||||   |        ||  | |||  |   ||| |    | |   | | | ||  | |||||  |   |  ||   |||| |       | | |  ||| ||                                                       
ACAATTCGGCGGCTTGCTCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgtactactgcagat-ttgctcttatgttcgcttttgctctga--ataaaaaagccttgtttg--gaaaagcataggattaattctgtgaacttacctgtgcaaac----------------------------------------------------

upper sequence: GLYMA19G31050.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G056099_T01 (Zea mays), 5'ss of exon 5
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttccgttaattttagatgaacttgtaaaattattgtgatataggttggtttgttgttcaatatgtcattattgagacccaataatttgtcatgttttatatatattttttgacttattttttaaatccctctttctattcattcag
   ||| |||||||||| |||||||||||||| || || |||||||| |||||||||||||||      ||      |    |   |  || ||   |  ||||   | ||        || | || || | ||||| |     ||  ||   || | |      |  | |  ||                                         
GTTTTACGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGCCGGCTGAGGAAAAAGgta------ttattagcatgactgtgtacacctg-ggatctattcctacat--------ttttggtgcagtgtgtcactccct-gatgcatgcatgtatgtgcactagtgtgaatc----------------------------------------

upper sequence: GLYMA19G31050.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G174284_T01 (Zea mays), 5'ss of exon 5
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgta-----aggccttttccgttaattttagatgaacttgtaaaattattgtgatataggttggtttgttgttcaatatgtcattattgagacccaataatttgtcatgttttatatatattttttgacttattttttaaatccctctttctattcattcag
   ||| |||||||||| |||||||||||||| || |||||||| || |||||||||||||||     ||      |  |   || |  ||   | || || |||| | |||   |  ||   |   || | ||   ||    |||     | |  || | ||                                                          
GTTTTACGACGGCTTGCCCAAAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGGAAAAAGgtattattagcatggctgtgcacatctgggagctatttctacaattttggtgcagtgtgtcactcccttatgca---tgcatgtatgtgcgcgcgctagtgtg----------------------------------------------------------

upper sequence: GLYMA19G31050.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 4
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttccgttaattttagatgaacttgtaaaattattgtgatataggttggtttgttgttcaatatgtcattattgagacccaataatttgtcatgttttatatatattttttgacttattttttaaatccctctttctattcattcag
|||||  | || ||||||||||||||||||||||| ||||| |||||||| ||||| |||||| |    |||  |||   |  |  |       ||||| | ||    |  |  || ||||       | ||| |  || |  ||   ||| | ||| |  |  | || |                                              
ACATTGCGTCGCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtattttagttt-ctacatctttgtacttaaaagtgtttgtttggatattagttt------tagtatatttttttgaag---caacactttatgtttctataga----------------------------------------------

upper sequence: GLYMA19G31050.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G361847_T03 (Zea mays), 5'ss of exon 5
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttccgttaattttagatgaacttgtaaaattattgtgatataggttggtttgttgttcaatatgtcattattgagaccca-ataatttgtcatgttttatatatattttttgacttattttttaaatccctctttctattcattcag
||| |  |||||||||| |||||||||||||| || || ||||| || |||||||||||||||        ||  | ||||| |  || | | | | ||  |||| ||| |   |   ||| |  || |||    | |||||  ||   |   |   || ||||  |  | |                                             
ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgta--------tcactaaatttcatctgtattagaacaa--attgagatgt---tctttttttgcttgaatgaagcgttatttggatatacgcatgatggcatgactagtttt--------------------------------------------

upper sequence: GLYMA19G31050.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G125243_T01 (Zea mays), 5'ss of exon 6
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttccgttaattttagatgaacttgtaaaattattgtgatataggttggtttgttgttcaatatgtcattattgagacccaataatttgtcatgttttatatatattttttgacttattttttaaatccctctttctattcattcag
||| |  | || ||||| ||||||||||| |||||||||||||||||| |  | ||||||||||           |  |  || || ||      ||  ||    |  |  || ||   ||  ||||||   | |||| ||    ||| | |    |  ||   ||  |  |                                            
ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTACGAAAAAAGgtaa---------tttggaagttggaagattactgaatctttgcttctttcagattccatttatgttcatcctatcatcatc---acctagtgtggtaccagtcttgctgca--------------------------------------------

upper sequence: GLYMA19G31050.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g05170.t01 (Vitis vinifera), 5'ss of exon 6
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttccg-------ttaattttagatgaacttgtaaaatt-attgtgatataggttggtttgttgttcaatatgtcat-tattgagacccaataatttgtcatgttttatat-atattttttgacttattttttaaatcc-----ctctttctattcattcag--------------------------
|||||| | |||||||||||||||||||| |||||||| ||||||||| | |||||||||||| | ||| ||  |       || |  || |||| |    | |  || | ||| || | |       ||   ||| |  |||    || ||           | ||   | || | | | || ||   ||   | ||    ||| |        | || | | || | |                           
ACATTACGCCGGCTTGCTCAAAATCGTGAAGCTGCCAGAAAAAGCCGATTAAGGAAAAAGgtaggtcctgttatgaaatgagttcacatttgatgtagacatcattttcactgttatgttgcacaaactgagtttctaagtgttggatagtgtattttttggttatggtttattctgtctcattttcactgttatgttacacaaacctgggagtgcattgtgtgcactaaatccctttttttggtttctctctttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340626|gb|GR854354.1|GR854354
EST:     GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAG                         GCATATGTGCAACAATTAGAGAGCAGTAG-TTGAAACTGACCCAACTTGAG
genomic: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: gi|7795353|gb|AW780812.1|AW780812
EST:     GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAAGAAAAAT                         GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
genomic: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: gi|254318164|gb|GR832332.1|GR832332
EST:     GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAG                         GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
genomic: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: gi|308098145|gb|HO761316.1|HO761316
EST:     GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAG                         GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
genomic: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: gi|11274519|gb|BF324872.1|BF324872
EST:     GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAG                         GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
genomic: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG