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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACAGCCATGAAAGAATATGGTATGGGTGATGATGCCACAATCAAGGAAATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgattttgtattatgtgatttgctacaagtttctattctagttccatagttaaatactcaatgttgtggtttcacagg

Basic information

species Glycine max
transcript GLYMA18G11030.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254341419|gb|GR855147.1|GR855147
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
EST: gi|22521911|gb|BU080722.1|BU080722
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
EST: gi|31458968|gb|CD400996.1|CD400996
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
EST: gi|209718566|gb|BW662684.1|BW662684
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
EST: gi|22521754|gb|BU080565.1|BU080565
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
EST: gi|16347333|gb|BI972928.1|BI972928
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACCGATCATG                         ATGGTAAAATCAACTATGAAGAA
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAA
EST: gi|58021875|gb|CX708616.1|CX708616
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAACAGCCATGAAAGAATATGGTATGGGTGATGATGCCACAATCAAGGAAATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgattttgtattatgtgatttgctacaagtttctattctagttccatagttaaatactcaatgttgtggtttcacagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA