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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatatctttgaggttccttgttatcaatttaaggttgggacctttaattttcataaaaccaatattgtggaacctgactatgctcttttttccctccag

Basic information

species Glycine max
transcript GLYMA10G01820.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685788|gb|AW756436.1|AW756436
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAA
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAA
EST: gi|208240285|gb|GE040911.1|GE040911
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|207826896|gb|GD797445.1|GD797445
EST:     TGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: TGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193622826|gb|FK571096.1|FK571096
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|16347802|gb|BI973397.1|BI973397
EST:     GTGTGGACATTTGCAAA-GTCTTGCTCCT                         ACTTACGAGAAAGTT
genomic: GTGTGGACATT-GCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTT
EST: gi|308098808|gb|HO760649.1|HO760649
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193581994|gb|FK536905.1|FK536905
EST:     GTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|213613771|gb|DB961268.1|DB961268
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|207775299|gb|GD750300.1|GD750300
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAAGATGTAGTAAT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAA-GATGTAGTAAT
EST: gi|193404855|gb|FK373338.1|FK373338
EST:     TGGACATTGC-AAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: TGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|208278564|gb|GE076243.1|GE076243
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAG
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAG
EST: gi|207757388|gb|GD727168.1|GD727168
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAG
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAG
EST: gi|209701913|gb|BW664567.1|BW664567
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193397053|gb|FK362009.1|FK362009
EST:     AAAGTNTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: AAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|208257921|gb|GE050952.1|GE050952
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|207839904|gb|GD810097.1|GD810097
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193411626|gb|FK381617.1|FK381617
EST:     GTGTGGACATTTGTCTAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATT-G-C-AAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|208106673|gb|GD905622.1|GD905622
EST:     GTGTGGACATTGCAAAAGTACTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGC
genomic: GTGTGGACATTGCAAAAGT-CTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGC
EST: gi|207847941|gb|GD819610.1|GD819610
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAAATTGGAAGGAAAGATGTAGTA
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAA-TTGGA-GGAA-GATGTAGTA
EST: gi|22540736|gb|BU090579.1|BU090579
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|151396040|gb|EV265917.1|EV265917
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|208117268|gb|GD918182.1|GD918182
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAGTTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|9440203|gb|BE440712.1|BE440712
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|213587217|gb|DB965921.1|DB965921
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|151397387|gb|EV267260.1|EV267260
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|208143785|gb|GD942886.1|GD942886
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAG
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAG
EST: gi|207783866|gb|GD756846.1|GD756846
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGC
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGC
EST: gi|6746823|gb|AW317279.1|AW317279
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|151406560|gb|EV276375.1|EV276375
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193415139|gb|FK378405.1|FK378405
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGA
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGA
EST: gi|209711953|gb|BW679032.1|BW679032
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193577177|gb|FK535700.1|FK535700
EST:     GTGTGGACA-TGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT