1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCCTGAGCATGAGTAGACTGGGTGGAGCTGGTGCTGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGgtgatgataaatactccaaatatgttttgaaatgctacttttttatattttttcataccctttttatcatgtcaatctaccttttctttattttcatcta...
species | Glycine max |
transcript | GLYMA20G36770.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGCTGTTGCTCAGCTTGTGGCTGATG-TCCCCTTTCTGCAGTGGAG GGGGATCAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGEST: gi|31471826|gb|CD413854.1|CD413854
genomic: CTGGTGCTGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGgtgatgataa ... ctacgagcagGGGGATCAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGG
EST: CTGGTGCTGTTGCTCAGCTTGTGCCTGATGTTCCCCTTTCTGCAGTGGAG GGGGATCAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGEST: gi|31305735|gb|CD390938.1|CD390938
genomic: CTGGTGCTGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGgtgatgataa ... ctacgagcagGGGGATCAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGG
EST: CTGGTGCTGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAG GGGGATCAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGEST: gi|20449248|gb|BQ253372.1|BQ253372
genomic: CTGGTGCTGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGgtgatgataa ... ctacgagcagGGGGATCAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGG
EST: CTGGTGCTGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAG GGGGATCAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGG
genomic: CTGGTGCTGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGgtgatgataa ... ctacgagcagGGGGATCAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTGAGCATGAGTAGACTGGGTGGAGCTGGTGCTGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGgtgatgataaatactccaaatatgttttgaaatgctacttttttatattttttcataccctttttatcatgtcaatctaccttttctttattttcatcta
- - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG