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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATTCAAACCAATAGCAGAATAGCCATTGGAGCTGCCATTTCTCCTGTCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAGgtcagtagttctcccacatgcaaattcatgaatgcgcattcatacatttcaaagtcaaataaaggattcaataaaagagtttaataatctgtacgtatta...

Basic information

species Glycine max
transcript GLYMA20G36380.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193698804|gb|FK641205.1|FK641205
EST:     TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAG                         GATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
genomic: TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAGgtcagtagtt ... tatgaattagGATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
EST: gi|51335381|gb|CO979247.1|CO979247
EST:     TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAG                         GATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
genomic: TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAGgtcagtagtt ... tatgaattagGATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
EST: gi|17401767|gb|BM178549.1|BM178549
EST:     TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAG                         GATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
genomic: TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAGgtcagtagtt ... tatgaattagGATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
EST: gi|207784139|gb|GD758449.1|GD758449
EST:     CTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAG                         GATCCAAAAGTGGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGT
genomic: CTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAGgtcagtagtt ... tatgaattagGATCCAAAAGT-GGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGT
EST: gi|58016541|gb|CX703283.1|CX703283
EST:     TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAG                         GATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
genomic: TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAGgtcagtagtt ... tatgaattagGATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
EST: gi|51342972|gb|CO983705.1|CO983705
EST:     TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAG                         GATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
genomic: TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAGgtcagtagtt ... tatgaattagGATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
EST: gi|17401803|gb|BM178585.1|BM178585
EST:     TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAG                         GATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
genomic: TCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAGgtcagtagtt ... tatgaattagGATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
EST: gi|207699901|gb|GD681580.1|GD681580
EST:     CTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAG                         GATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA
genomic: CTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAGgtcagtagtt ... tatgaattagGATCCAAAAGTGGGGAATTGGTGGATGAGTTTTGGTGACAACACATTGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTATTCAAACCAATAGCAGAATAGCCATTGGAGCTGCCATTTCTCCTGTCTCTTCTTATGATGGCAACCAATATGACATCACAATCCTCATTTGGAAGgtcagtagttctcccacatgcaaattcatgaatgcgcattcatacatttcaaagtcaaataaaggattcaataaaagagtttaataatctgtacgtatta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccac