Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaattaataaattctattgtcttaaacagtcactcaatcagaggcttttctttcaatcctcataaaatgatttcaatgcgcag

Basic information

species Glycine max
transcript GLYMA20G28860.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G165998_T01 (Zea mays), 5'ss of exon 6
GCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaattaataaattctattgtcttaaacag--tcactcaatcagag--gcttttctttcaatcctcataaaatgatttcaatgcgcag-----------------------------------------------------------
||  ||||| | ||||| |||||||| || ||||| ||||||||||||||  ||||||||||||| || ||||||||          |||   | || || | |     ||  | ||  |  |  |  | |||  || |  |   ||  | ||  | | ||                                                            
GCAATGCGTCTATTTGTGGGTGAGCCTGTCTGGACACCATACAATCGTCCGCATGACCATCTCCCGGCTAGgtatgatcctgcg---tctgaagcctaaagctggactgctggagcattgttgtgtcccattctctctttcttggattctctcgcttc-cactttcgttattctctggttcctgttggctttaacaaaacggaacattcgcatggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888471|gb|BQ741684.1|BQ741684
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTG
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTG
EST: gi|254333158|gb|GR850408.1|GR850408
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|7693449|gb|AW761541.1|AW761541
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|37995680|gb|CF807269.1|CF807269
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|213617570|gb|DB969282.1|DB969282
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGT
EST: gi|209728725|gb|BW655418.1|BW655418
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|192312869|gb|FK005453.1|FK005453
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|254345989|gb|GR859636.1|GR859636
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|192312868|gb|FK005452.1|FK005452
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|120492785|gb|EH220952.1|EH220952
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAANAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|209704933|gb|BW661723.1|BW661723
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|120492659|gb|EH220826.1|EH220826
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|26060181|gb|CA803095.1|CA803095
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|120492941|gb|EH221108.1|EH221108
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|22522689|gb|BU081500.1|BU081500
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|24136099|gb|BU926609.1|BU926609
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGA
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGA
EST: gi|21887607|gb|BQ740820.1|BQ740820
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTG
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTG
EST: gi|192297717|gb|FG989952.1|FG989952
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|26059241|gb|CA802155.1|CA802155
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTTT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|151396844|gb|EV266717.1|EV266717
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|254338222|gb|GR849747.1|GR849747
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACA-CA-TATGTCAAGGATTTTGTGGAAA-GGATG
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATG
EST: gi|192294801|gb|FG987490.1|FG987490
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAA-GGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|6963527|gb|AW432220.1|AW432220
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAATGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|209706332|gb|BW680692.1|BW680692
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|254332911|gb|GR850161.1|GR850161
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|26058060|gb|CA800974.1|CA800974
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|254336203|gb|GR842382.1|GR842382
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|254324010|gb|GR836242.1|GR836242
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|254336202|gb|GR842381.1|GR842381
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|254323704|gb|GR836043.1|GR836043
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|8827472|gb|BE211202.1|BE211202
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGGATTT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGG-ATTT
EST: gi|151408479|gb|EV278287.1|EV278287
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|9898912|gb|BE607880.1|BE607880
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAA                         ACAACAATATGTC
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTC
EST: gi|207810014|gb|GD781528.1|GD781528
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTAGCAACCATGCTGT
EST: gi|23052890|gb|BU577381.1|BU577381
EST:     GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG                         ACAACAATATGTCAAGGATTTTGTG
genomic: GAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAGgtatgaatta ... caatgcgcagACAACAATATGTCAAGGATTTTGTG